CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig2640_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.46 61.0 Contig2640_s_at Contig2640 - - 3e-20 At1g05010 EFE (ETHYLENE-FORMING ENZYME) S.X. H.G.
0.35 45.1 Contig19617_at Contig19617 - - 2e+0 At5g55320 membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related S.X. H.G.
0.24 27.2 Contig17657_at Contig17657 - - 3e+0 At5g25750 unknown protein S.X. H.G.
0.18 18.2 HV_CEb0011H11r2_x_at HV_CEb0011H11r2 - - 3e+0 At1g34640 unknown protein S.X. H.G.
0.13 11.6 Contig16357_at Contig16357 - - 4e-5 At2g45530 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.11 9.4 Contig14638_at Contig14638 - - 4e-35 At4g30800 40S ribosomal protein S11 (RPS11B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.5 99.2 GSM261052 Bonus Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.9 99.1 GSM261075 Albina e-16 Control rep2 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.8 99.1 GSM261076 Albina e-16 Control rep3 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.0 98.7 GSM261074 Albina e-16 Control rep1 GSE10332 Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.3 98.1 GSM68892 3 h salt stressed replicate 1 GSE3097 Barley1 salinity stress study
5.6 97.7 GSM68893 3 h salt stressed replicate 2 GSE3097 Barley1 salinity stress study
4.6 96.8 GSM71142 OWB-R stress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
4.5 96.7 GSM398274 Moroc9-75_0d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.5 96.7 GSM71143 OWB-R stress replicate 2 GSE3170 Barley single feature polymorphisms and drought stress gene expression
4.4 96.6 GSM398265 HS41-1_1d_rep2 GSE15970 Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.57 1e-172 605 Contig2643_at Contig2643 - - 3e+0 At3g14760 unknown protein C.G. S.X.
0.47 9e-121 432 rbasd24g02_s_at rbasd24g02 - - 4e+0 At5g02090 unknown protein C.G. S.X.
0.47 9e-121 432 rbasd24g02_at rbasd24g02 - - 4e+0 At5g02090 unknown protein C.G. S.X.
0.34 9e-84 309 Contig2636_s_at Contig2636 - - 7e-7 At1g12010 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative C.G. S.X.
0.28 5e-82 303 EBro03_SQ004_E10_at EBro03_SQ004_E10 - - 3e+0 At4g20290 unknown protein C.G. S.X.
0.36 5e-39 161 Contig2638_at Contig2638 - - 7e-2 At1g12010 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative C.G. S.X.
0.28 2e-38 159 HVSMEm0001O15r2_s_at HVSMEm0001O15r2 - - 9e-8 At1g05010 EFE (ETHYLENE-FORMING ENZYME) C.G. S.X.
0.20 2e-38 159 Contig2642_at Contig2642 - - 2e-1 At1g77330 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative C.G. S.X.
0.20 3e-34 145 Contig2639_at Contig2639 - - 1e-2 At1g12010 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 3e-20 99 Arabidopsis thaliana At1g05010 839345 EFE (ETHYLENE-FORMING ENZYME) Encodes 1-aminocyclopropane-1-carboxylate oxidase - - - C.G. S.X.
0.14 9e-6 52 Glycine max Gma.2776.1.S1_at BI968513 - - 1e-14 At1g05010 EFE (ETHYLENE-FORMING ENZYME) C.G. S.X.
0.39 0 642 Oryza sativa Os09g0451000 AK065039.1 - 1-aminocyclopropane-1-carboxylate oxidase 1 (EC1.14.17.4) (ACC oxidase 1) (Ethylene-forming enzyme)(EFE) 1e-11 At1g12010 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative C.G. S.X.
0.20 1e-20 101 Populus trichocarpa Ptp.5328.1.S1_s_at CV236383 1-aminocyclopropane-1-carboxylate - 1e-26 At1g62380 ACO2 (ACC OXIDASE 2) C.G. S.X.
0.69 0 636 Triticum aestivum Ta.9107.2.S1_at BJ307565 - - 4e+0 At5g14330 unknown protein C.G. S.X.
0.23 9e-21 99 Vitis vinifera 1616698_at CF201799.1 hypothetical protein LOC100256784 - 9e-21 At1g05010 EFE (ETHYLENE-FORMING ENZYME) C.G. S.X.
0.35 6e-63 240 Zea mays Zm.18900.1.S1_at AY359575.1 acc oxidase - 7e-7 At1g12010 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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