Gene omics information

Query gene ID	Contig26400_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig26400_at	Contig26400	-	-	2e-5	At5g63040	unknown protein	S.X.	H.G.	Please select
0.60	77.3	Contig26424_at	Contig26424	-	-	4e+0	At5g13240	transcription regulator	S.X.	H.G.	Please select
0.50	66.9	HVSMEn0020I19r2_at	HVSMEn0020I19r2	-	-	2e+0	At1g72290	trypsin and protease inhibitor family protein / Kunitz family protein	S.X.	H.G.	Please select
0.44	58.9	Contig6353_at	Contig6353	-	-	3e+0	At5g63230	-	S.X.	H.G.	Please select
0.44	58.9	Contig2421_at	Contig2421	-	-	7e-2	At5g02380	MT2B (METALLOTHIONEIN 2B)	S.X.	H.G.	Please select
0.36	47.1	Contig14353_at	Contig14353	-	-	9e-3	At1g49950	DNA-binding protein, putative	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.1	96.2	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.8	95.7	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
3.7	95.5	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
3.7	95.5	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
3.6	95.3	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.5	95.1	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
3.4	94.8	GSM160815	drought control rep3	GSE6990	Barley drought stress
3.4	94.8	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
3.4	94.8	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
3.4	94.8	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-2	38	Contig1138_at	Contig1138	-	-	2e-14	At1g07790	HTB1	C.G.	S.X.	Please select
0.01	6e-1	34	Contig19417_at	Contig19417	-	-	6e-1	At2g33255	catalytic/ hydrolase/ phosphoglycolate phosphatase	C.G.	S.X.	Please select
0.02	6e-1	34	Contig17265_at	Contig17265	-	-	2e-13	At1g22800	methyltransferase	C.G.	S.X.	Please select
0.03	2e+0	32	rbaal14c13_at	rbaal14c13	-	-	3e+0	At1g67870	glycine-rich protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig819_at	Contig819	-	-	3e+0	At5g37770	TCH2 (TOUCH 2)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig13525_at	Contig13525	-	-	2e-3	At5g37350	RIO1 family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Contig22948_at	Contig22948	-	-	2e-8	At1g67060	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig15865_at	Contig15865	-	-	2e-12	At3g07370	CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN)	C.G.	S.X.	Please select
0.01	2e+0	32	Contig4737_s_at	Contig4737	-	-	3e-29	At2g35040	AICARFT/IMPCHase bienzyme family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	2e-5	50	Arabidopsis thaliana	At5g63040	836424	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e-1	38	Glycine max	GmaAffx.69925.1.S1_at	BU577168	-	-	1e+0	At5g48280	unknown protein	C.G.	S.X.	Please select
0.39	7e-127	454	Oryza sativa	Os01g0704200	9629.m04922	-	Conserved hypothetical protein	9e-12	At5g63040	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	7e-9	61	Populus trichocarpa	PtpAffx.210602.1.S1_at	pmrna20800	hypothetical protein	-	6e-22	At5g63040	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	3e-1	36	Triticum aestivum	TaAffx.25461.1.S1_at	CA699639	-	-	4e+0	At3g62510	protein disulfide isomerase-related	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1608595_at	CF413802	-	-	1e+0	At4g04580	myb family transcription factor	C.G.	S.X.	Please select
0.45	2e-93	341	Zea mays	Zm.2635.1.A1_at	CF244162	hypothetical protein LOC100216945	-	7e-9	At5g63040	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage