Gene omics information

Query gene ID	Contig26293_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.7	Contig26293_at	Contig26293	-	-	2e+0	At5g37580	-	S.X.	H.G.	Please select
0.60	77.3	Contig25750_at	Contig25750	-	-	4e+0	At5g07880	SNAP29	S.X.	H.G.	Please select
0.55	72.0	HVSMEf0020M03r2_at	HVSMEf0020M03r2	-	-	4e+0	At1g76980	-	S.X.	H.G.	Please select
0.50	66.9	Contig19696_at	Contig19696	-	-	2e+0	At4g23410	TET5 (TETRASPANIN5)	S.X.	H.G.	Please select
0.17	16.9	Contig9255_at	Contig9255	-	-	3e+0	At3g47620	AtTCP14 (TEOSINTE BRANCHED1, CYCLOIDEA and PCF (TCP) 14)	S.X.	H.G.	Please select
0.13	11.6	Contig25019_at	Contig25019	-	-	9e-2	At3g46910	ubiquitin protein ligase binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.9	98.7	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.5	97.6	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
5.1	97.3	GSM419978	Awn_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.1	97.3	GSM440969	Control awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM261058	Xantha b-12 Cotrol rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.1	96.2	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
4.0	96.0	GSM160823	19% SWC rep1	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	HVSMEn0020M17r2_at	HVSMEn0020M17r2	-	-	8e-1	At3g15760	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig2324_at	Contig2324	-	-	8e-2	At1g42710	-	C.G.	S.X.	Please select
0.03	7e-1	34	HVSMEn0024D14f2_x_at	HVSMEn0024D14f2	-	-	2e+0	At2g10940	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.03	7e-1	34	HVSMEh0088N09r2_at	HVSMEh0088N09r2	-	-	2e-1	At5g19570	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Contig3597_at	Contig3597	-	-	1e-1	At1g47960	C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)	C.G.	S.X.	Please select
0.01	7e-1	34	Contig1794_s_at	Contig1794	-	-	2e-155	At4g13940	MEE58 (MATERNAL EFFECT EMBRYO ARREST 58)	C.G.	S.X.	Please select
0.03	3e+0	32	Contig7616_at	Contig7616	-	-	1e+0	At4g33520	PAA1 (P-TYPE ATP-ASE 1)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig16874_at	Contig16874	-	-	6e+0	At5g67010	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.02	3e+0	32	HVSMEg0017O10r2_s_at	HVSMEg0017O10r2	-	-	4e+0	At4g13955	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g37580	-	-	-	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	2e-3	44	Glycine max	Gma.17955.1.S1_s_at	BM307749	-	-	3e-31	At1g72820	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.39	1e-91	337	Oryza sativa	Os09g0444700	AK120833.1	-	Mitochondrial carrier-like protein	2e-1	At2g28920	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	9e+0	32	Populus trichocarpa	PtpAffx.62585.1.A1_at	CV273954	-	-	5e-3	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.62	8e-163	573	Triticum aestivum	Ta.6342.1.S1_at	BJ302601	-	-	1e+1	At5g15581	unknown protein	C.G.	S.X.	Please select
0.07	8e-6	50	Vitis vinifera	1621277_at	CF369061	hypothetical protein LOC100252641	-	2e-24	At1g72820	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.10	5e-20	97	Zea mays	ZmAffx.106.1.A1_at	AI665540	-	-	3e+0	At4g14060	major latex protein-related / MLP-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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