Gene omics information

Query gene ID	Contig26292_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	Contig26292_at	Contig26292	-	-	5e+0	At2g42000	plant EC metallothionein-like family 15 protein	S.X.	H.G.	Please select
0.83	94.0	Contig21616_s_at	Contig21616	-	-	8e-1	At4g18480	CHLI1	S.X.	H.G.	Please select
0.80	92.5	Contig25654_at	Contig25654	-	-	2e+0	At3g12145	FLR1	S.X.	H.G.	Please select
0.67	84.7	Contig2447_x_at	Contig2447	-	-	3e-1	At5g05230	ubiquitin-protein ligase	S.X.	H.G.	Please select
0.56	74.3	Contig25150_at	Contig25150	-	-	3e-1	At3g23400	plastid-lipid associated protein PAP / fibrillin family protein	S.X.	H.G.	Please select
0.53	69.7	Contig1852_at	Contig1852	-	-	1e-2	At5g40150	peroxidase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.0	99.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
25.9	99.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
22.0	99.8	GSM146379	Maythorpe shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
17.7	99.7	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
16.3	99.6	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
14.9	99.5	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
14.1	99.5	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
13.8	99.5	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
13.2	99.4	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
11.7	99.3	GSM146371	Golden Promise shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-1	34	Contig2958_at	Contig2958	-	-	3e+0	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	C.G.	S.X.	Please select
0.02	7e-1	34	Contig5814_at	Contig5814	-	-	2e-2	At4g30330	small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Contig4619_at	Contig4619	-	-	2e+0	At3g44140	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig6800_at	Contig6800	-	-	2e-1	At1g65270	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig6018_at	Contig6018	-	-	5e-18	At5g56580	MKK6 (MAP KINASE KINASE 6)	C.G.	S.X.	Please select
0.03	3e+0	32	HVSMEn0019L21f_at	HVSMEn0019L21f	-	-	4e+0	At1g18280	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.03	3e+0	32	Contig21068_at	Contig21068	-	-	1e+0	At3g07510	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig6801_at	Contig6801	-	-	9e-2	At1g65270	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig24962_at	Contig24962	-	-	6e+0	At5g15581	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At2g42000	818800	plant EC metallothionein-like family 15 protein	F:zinc ion binding;P:biological_process unknown;C:unknown;PMOBF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.psZG007xH18f_s_at	PsAffx.psZG007xH18f	-	-	3e+1	At5g46430	60S ribosomal protein L32 (RPL32B)	C.G.	S.X.	Please select
0.17	2e-75	284	Oryza sativa	Os04g0576900	AK102667.1	-	Protein kinase domain containing protein	9e-8	At1g75640	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.223352.1.S1_s_at	pmrna41301	high affinity inorganic phosphate transporter /// high affinity inorganic phosphate transporter	-	2e-10	At5g43370	APT1 (ARABIDOPSIS PHOSPHATE TRANSPORTER 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.89	1e-145	515	Triticum aestivum	Ta.7675.1.A1_at	BJ311903	-	-	5e+0	At2g42000	plant EC metallothionein-like family 15 protein	C.G.	S.X.	Please select
0.05	6e+0	30	Vitis vinifera	1615921_at	CF513917	hypothetical protein LOC100262619	-	2e-13	At4g36180	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.30	8e-65	246	Zea mays	Zm.4702.1.A1_at	CA401021	-	-	9e-3	At4g36180	leucine-rich repeat family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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