Gene omics information

Query gene ID	Contig26252_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig26252_at	Contig26252	-	-	1e+0	At4g19680	IRT2	S.X.	H.G.	Please select
0.91	98.1	HVSMEc0015H24f_at	HVSMEc0015H24f	-	-	1e-86	Atcg00430	-	S.X.	H.G.	Please select
0.60	77.3	Contig10151_s_at	Contig10151	-	-	2e+0	At5g28750	thylakoid assembly protein, putative	S.X.	H.G.	Please select
0.59	75.8	baak1p18_s_at	baak1p18	-	-	7e-1	At1g02710	glycine-rich protein	S.X.	H.G.	Please select
0.57	74.9	AF069331_s_at	AF069331	low temperature induced protein	-	2e+1	At5g17523	-	S.X.	H.G.	Please select
0.50	66.9	Contig17176_at	Contig17176	-	-	4e-4	At1g80860	PLMT (PHOSPHOLIPID N-METHYLTRANSFERASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.8	99.9	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
29.1	99.9	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
24.7	99.8	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
22.5	99.8	GSM261039	Dicktoo-deacclimation-rep1	GSE10329	Low temperature stress in cv. Dicktoo
18.7	99.7	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
11.8	99.3	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
9.6	99.0	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
8.8	98.9	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.7	98.9	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.1	98.4	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	Contig1419_s_at	Contig1419	-	-	6e-2	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please select
0.03	2e+0	32	rbaal5d06_s_at	rbaal5d06	-	-	1e+0	At5g45113	mitochondrial transcription termination factor-related / mTERF-related	C.G.	S.X.	Please select
0.01	2e+0	32	Contig6755_s_at	Contig6755	-	-	4e-4	At3g14205	phosphoinositide phosphatase family protein	C.G.	S.X.	Please select
0.03	8e+0	30	rbaal0c08_s_at	rbaal0c08	-	-	5e+0	At4g02235	AGL51	C.G.	S.X.	Please select
0.02	8e+0	30	Contig13550_at	Contig13550	-	-	7e-7	At5g42660	unknown protein	C.G.	S.X.	Please select
0.03	8e+0	30	Contig7202_s_at	Contig7202	-	-	5e-3	At5g47630	mtACP3 (mitochondrial acyl carrier protein 3)	C.G.	S.X.	Please select
0.02	8e+0	30	Contig7199_at	Contig7199	-	-	3e-2	At5g49840	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding	C.G.	S.X.	Please select
0.02	8e+0	30	Contig17029_at	Contig17029	-	-	5e+0	At3g61827	unknown protein	C.G.	S.X.	Please select
0.04	8e+0	30	Contig16352_at	Contig16352	-	-	3e-1	At4g19850	ATPP2-A2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e+0	34	Arabidopsis thaliana	At4g19680	827712	IRT2	encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	6e+0	32	Glycine max	Psojae_rRNA_1553_at	Psojae_rRNA_1553	-	-	3e-1	At4g29420	F-box family protein	C.G.	S.X.	Please select
0.33	2e-124	446	Oryza sativa	Os04g0613000	AY323915.1	-	Zinc transporter 1 precursor (ZRT/IRT-like protein1)	1e-2	At2g32270	ZIP3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	1e+0	34	Populus trichocarpa	PtpAffx.212974.1.S1_s_at	pmrna25380	ZIP transporter /// ZIP transporter /// ZIP transporter	-	2e-12	At1g31260	ZIP10 (ZINC TRANSPORTER 10 PRECURSOR)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.42	3e-75	282	Triticum aestivum	TaAffx.106421.1.S1_at	CD933478	zinc transporter ZIP	-	3e+0	At5g62160	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	C.G.	S.X.	Please select
0.07	2e-2	38	Vitis vinifera	1609925_at	CF203692.1	-	-	2e-2	At2g30080	ZIP6	C.G.	S.X.	Please select
0.04	4e-1	34	Zea mays	ZmAffx.463.1.A1_at	AI677335	-	-	3e+0	At4g33450	MYB69 (MYB DOMAIN PROTEIN 69)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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