Gene omics information

Query gene ID	Contig26234_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.3	Contig26234_at	Contig26234	-	-	1e-3	At2g35360	ubiquitin family protein	S.X.	H.G.	Please select
0.91	98.1	Contig9899_at	Contig9899	-	-	4e-1	At1g65430	zinc finger protein-related	S.X.	H.G.	Please select
0.80	92.5	Contig7691_at	Contig7691	pathogen induced protein 2-4	-	4e-2	At2g21620	RD2	S.X.	H.G.	Please select
0.67	84.7	HS05I21u_s_at	HS05I21u	-	-	4e+0	At3g01322	-	S.X.	H.G.	Please select
0.33	42.6	Contig2747_at	Contig2747	-	-	3e-19	At1g08450	CRT3 (CALRETICULIN 3)	S.X.	H.G.	Please select
0.29	35.5	Contig122_at	Contig122	-	-	9e-27	At5g59690	histone H4	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.8	99.5	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
12.4	99.4	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
8.1	98.7	GSM398251	Martin_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.8	98.6	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
7.2	98.5	GSM261037	Dicktoo-subzero-rep2	GSE10329	Low temperature stress in cv. Dicktoo
5.9	97.9	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.7	97.7	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
5.6	97.7	GSM398252	Martin_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.4	97.5	GSM261035	Dicktoo-chilling-rep3	GSE10329	Low temperature stress in cv. Dicktoo
5.1	97.3	GSM363463	5 mM B(OH)3 treatment (5B) - rep1	GSE14521	Late response to boron toxicity in barley leaves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	2e-179	626	Contig9835_at	Contig9835	-	-	2e-3	At2g35360	ubiquitin family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig6761_at	Contig6761	-	-	6e-11	At3g43790	ZIFL2 (ZINC INDUCED FACILITATOR-like 2)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig9502_at	Contig9502	-	-	9e-7	At5g62910	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.02	3e+0	32	Contig14854_at	Contig14854	-	-	8e-1	At4g08480	MAPKKK9	C.G.	S.X.	Please select
0.01	1e+1	30	Contig7804_at	Contig7804	-	-	3e-25	At2g44900	armadillo/beta-catenin repeat family protein / F-box family protein	C.G.	S.X.	Please select
0.01	1e+1	30	Contig7176_at	Contig7176	-	-	3e-7	At5g01770	RAPTOR2 (RAPTOR2)	C.G.	S.X.	Please select
0.03	1e+1	30	Contig18447_at	Contig18447	-	-	2e-1	At4g29670	thioredoxin family protein	C.G.	S.X.	Please select
0.02	1e+1	30	Contig16495_at	Contig16495	-	-	4e-1	At1g28280	VQ motif-containing protein	C.G.	S.X.	Please select
0.01	1e+1	30	Contig15892_at	Contig15892	-	-	3e+0	At4g02140	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-3	44	Arabidopsis thaliana	At2g35360	818103	ubiquitin family protein	F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	HgAffx.15646.3.S1_at	CK350293	-	-	7e-1	At4g36040	DNAJ heat shock N-terminal domain-containing protein (J11)	C.G.	S.X.	Please select
0.12	6e-35	149	Oryza sativa	Os09g0573100	AK121232.1	-	Ubiquitin domain containing protein	5e-2	At5g22390	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e+0	34	Populus trichocarpa	Ptp.2115.1.S1_at	CK110429	hypothetical protein	-	5e-28	At2g07340	prefoldin-related KE2 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.26	2e-116	418	Triticum aestivum	Ta.3373.1.S1_at	CD936254	-	-	8e-4	At2g35360	ubiquitin family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1620128_at	CF403333	-	-	7e-1	At1g33640	unknown protein	C.G.	S.X.	Please select
0.22	6e-35	147	Zea mays	Zm.10375.1.S1_at	BQ703821	-	-	2e-17	At2g35360	ubiquitin family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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