Gene omics information

Query gene ID	Contig26171_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig26171_at	Contig26171	-	-	2e+0	At1g52580	ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)	S.X.	H.G.	Please select
0.73	88.7	Contig3147_at	Contig3147	-	-	3e-4	At1g09940	HEMA2	S.X.	H.G.	Please select
0.71	87.1	Contig23108_at	Contig23108	-	-	8e-1	At3g16280	DNA binding / transcription factor	S.X.	H.G.	Please select
0.67	84.7	Contig10718_at	Contig10718	-	-	2e-7	At1g78440	ATGA2OX1 (gibberellin 2-oxidase 1)	S.X.	H.G.	Please select
0.67	84.7	Contig3198_at	Contig3198	-	-	6e+0	At5g25940	early nodulin-related	S.X.	H.G.	Please select
0.61	78.7	Contig5241_at	Contig5241	-	-	8e-2	At5g08790	ATAF2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.8	99.4	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
10.2	99.1	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress
10.0	99.1	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
9.4	99.0	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
8.9	98.9	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.9	98.9	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
8.7	98.9	GSM419977	Palea_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.7	98.9	GSM440965	Control palea_Rep3	GSE17669	Gene expression in the barley spike during drought stress
8.6	98.8	GSM382236	Root_Control2	GSE15295	Mercury toxicity in barley roots
8.1	98.7	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	34	Contig18350_at	Contig18350	-	-	7e+0	At4g00140	EDA34 (embryo sac development arrest 34)	C.G.	S.X.	Please select
0.03	3e-1	34	Contig10607_at	Contig10607	-	-	5e-1	At4g32830	AtAUR1 (ATAURORA1)	C.G.	S.X.	Please select
0.02	1e+0	32	Contig3841_at	Contig3841	-	-	3e-12	At5g42050	-	C.G.	S.X.	Please select
0.03	1e+0	32	Contig20765_at	Contig20765	-	-	1e-4	At3g05510	phospholipid/glycerol acyltransferase family protein	C.G.	S.X.	Please select
0.01	1e+0	32	Contig4970_at	Contig4970	-	-	1e-9	At5g20950	glycosyl hydrolase family 3 protein	C.G.	S.X.	Please select
0.03	1e+0	32	Contig13608_at	Contig13608	-	-	1e-1	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	C.G.	S.X.	Please select
0.04	1e+0	32	Contig20674_at	Contig20674	-	-	5e+0	At5g30495	-	C.G.	S.X.	Please select
0.05	1e+0	32	Contig8558_s_at	Contig8558	-	-	3e+0	At1g49150	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Contig16563_at	Contig16563	-	-	1e+0	At1g30475	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	Arabidopsis thaliana	At1g52580	841690	ATRBL5 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 5)	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOMPFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-1	36	Glycine max	GmaAffx.82626.1.S1_at	BM108148	-	-	1e+0	At5g25600	-	C.G.	S.X.	Please select
0.04	1e+0	34	Oryza sativa	Os10g0452700	9638.m02724	-	Eggshell protein family protein	2e-2	At1g36940	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e+0	32	Populus trichocarpa	PtpAffx.32845.1.S1_at	CK097658	hypothetical protein	-	5e-61	At2g20140	26S protease regulatory complex subunit 4, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	6e-1	34	Triticum aestivum	Ta.16708.1.S1_at	CA611303	-	-	9e-1	At5g46620	unknown protein	C.G.	S.X.	Please select
0.04	3e+0	30	Vitis vinifera	1618218_at	CA817669	-	-	8e-14	At3g60260	phagocytosis and cell motility protein ELMO1-related	C.G.	S.X.	Please select
0.02	6e-2	36	Zea mays	Zm.386.1.S1_at	L20621.1	tassel seed2	-	4e-2	At3g13850	LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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