Gene omics information

Query gene ID	Contig26019_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	89.5	Contig26019_at	Contig26019	-	-	3e+0	At2g29650	PHT4	S.X.	H.G.	Please select
0.67	84.7	HX07O15r_at	HX07O15r	-	-	4e+0	At5g05470	EIF2 ALPHA	S.X.	H.G.	Please select
0.44	58.9	Contig13965_at	Contig13965	-	-	7e+0	At5g55056	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig7087_at	Contig7087	-	-	8e-1	At3g27160	GHS1 (GLUCOSE HYPERSENSITIVE 1)	S.X.	H.G.	Please select
0.38	49.5	Contig13884_at	Contig13884	-	-	3e-5	At2g37510	RNA-binding protein, putative	S.X.	H.G.	Please select
0.36	47.1	Contig11177_at	Contig11177	-	-	5e-1	At5g53730	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	S.X.	H.G.	Please select
0.35	45.1	HVSMEg0010O10r2_s_at	HVSMEg0010O10r2	-	-	8e-1	At1g28815	unknown protein	S.X.	H.G.	Please select
0.31	38.6	Contig14949_at	Contig14949	-	-	3e-2	At3g19100	calcium-dependent protein kinase, putative / CDPK, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
221.6	100.0	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
115.9	100.0	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.6	95.3	GSM372942	genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
1.7	86.5	GSM311263	kara_without_aphids_2	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines
1.5	84.4	GSM372960	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
1.5	84.4	GSM398249	Martin_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
1.4	83.1	GSM372977	genotype: 11542 - pathogen isolates: 5874 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
1.2	80.2	GSM372961	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
1.2	80.2	GSM398254	Martin_1d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	34	HI01M23w_at	HI01M23w	-	-	6e+0	At4g22890	PGR5-LIKE A	C.G.	S.X.	Please select
0.02	4e-1	34	Contig8220_at	Contig8220	-	-	6e-1	At1g33040	NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)	C.G.	S.X.	Please select
0.05	2e+0	32	Contig24718_at	Contig24718	-	-	4e+0	At2g19802	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Contig4916_at	Contig4916	-	-	4e-15	At4g13360	catalytic	C.G.	S.X.	Please select
0.04	2e+0	32	Contig21096_at	Contig21096	-	-	5e+0	At3g12930	-	C.G.	S.X.	Please select
0.02	2e+0	32	Contig8378_at	Contig8378	-	-	2e+0	At2g28370	-	C.G.	S.X.	Please select
0.02	2e+0	32	Contig5219_s_at	Contig5219	-	-	3e-9	At5g42100	ATBG_PAP	C.G.	S.X.	Please select
0.03	6e+0	30	rbags12k11_s_at	rbags12k11	-	-	1e-6	At3g25540	LAG1	C.G.	S.X.	Please select
0.02	6e+0	30	Contig9095_at	Contig9095	-	-	2e+0	At1g29380	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	32	Arabidopsis thaliana	At2g29650	817515	PHT4	Encodes an inorganic phosphate transporter (PHT4;1) that is localized to the thylakoid membrane.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.75803.1.S1_at	AW508930	-	-	6e-8	At3g58670	unknown protein	C.G.	S.X.	Please select
0.04	3e+1	30	Oryza sativa	OsAffx.29083.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.92919.1.S1_at	AI164790	hypothetical protein	-	2e-1	At1g24440	protein binding / zinc ion binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.64	1e-79	295	Triticum aestivum	TaAffx.24864.1.S1_at	CA710837	-	-	1e+1	At5g18380	40S ribosomal protein S16 (RPS16C)	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1622603_at	CB344263	hypothetical protein LOC100247693	-	3e-19	At3g25400	-	C.G.	S.X.	Please select
0.04	6e+0	30	Zea mays	Zm.3413.1.S1_at	CA827149	-	-	9e-19	At1g16820	vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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