Gene omics information

Query gene ID	Contig25984_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.7	Contig25984_at	Contig25984	-	-	9e-1	At4g24380	unknown protein	S.X.	H.G.	Please select
0.80	92.5	Contig4333_at	Contig4333	-	-	6e-10	At1g64520	RPN12a (Regulatory Particle non-ATPase 12a)	S.X.	H.G.	Please select
0.43	56.4	Contig6570_at	Contig6570	-	-	1e-2	At1g75388	CPuORF5 (Conserved peptide upstream open reading frame 5)	S.X.	H.G.	Please select
0.40	53.1	Contig1954_at	Contig1954	-	-	2e+0	At1g31070	UDP-N-acetylglucosamine pyrophosphorylase-related	S.X.	H.G.	Please select
0.36	47.1	Contig24190_at	Contig24190	-	-	3e-1	At3g59110	protein kinase family protein	S.X.	H.G.	Please select
0.02	1.8	Contig7048_at	Contig7048	-	-	4e-15	At2g30050	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.4	99.8	GSM281747	Genotype: Steptoe - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
20.3	99.7	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
13.3	99.4	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
12.8	99.4	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
11.9	99.3	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
11.7	99.3	GSM398251	Martin_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.1	98.9	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
8.4	98.8	GSM363464	5 mM B(OH)3 treatment (5B) - rep2	GSE14521	Late response to boron toxicity in barley leaves
7.6	98.6	GSM71157	Steptoe stress and unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
6.9	98.3	GSM281745	Genotype: Steptoe - rep1	GSE11182	Steptoe x Morex seedling leaf comparison

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	3e-2	38	HM08L19r_at	HM08L19r	-	-	3e-2	At3g09980	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	34	Contig6128_s_at	Contig6128	-	-	2e+0	At2g17640	ATSERAT3	C.G.	S.X.	Please select
0.04	4e-1	34	Contig18209_at	Contig18209	-	-	2e+0	At3g26080	plastid-lipid associated protein PAP / fibrillin family protein	C.G.	S.X.	Please select
0.02	4e-1	34	Contig6128_at	Contig6128	-	-	2e+0	At2g17640	ATSERAT3	C.G.	S.X.	Please select
0.03	4e-1	34	HX01L04w_at	HX01L04w	-	-	5e+0	At5g58920	unknown protein	C.G.	S.X.	Please select
0.03	7e+0	30	Contig21204_at	Contig21204	-	-	1e+0	At3g54640	TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)	C.G.	S.X.	Please select
0.03	7e+0	30	Contig15704_at	Contig15704	-	-	9e-2	At3g33494	unknown protein	C.G.	S.X.	Please select
0.02	7e+0	30	Contig10107_at	Contig10107	-	-	2e-1	At1g17070	D111/G-patch domain-containing protein	C.G.	S.X.	Please select
0.01	7e+0	30	Contig6879_at	Contig6879	-	-	4e-24	At1g75330	OTC (ORNITHINE CARBAMOYLTRANSFERASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e-1	34	Arabidopsis thaliana	At4g24380	828540	unknown protein	F:unknown;P:10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process;C:unknown;FMPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e+0	32	Glycine max	HgAffx.15853.1.S1_at	CB281141	-	-	7e-1	At5g63870	PP7 (SERINE/THREONINE PHOSPHATASE 7)	C.G.	S.X.	Please select
0.04	3e+1	30	Oryza sativa	OsAffx.5388.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	PtpAffx.119420.1.A1_at	BP932907	GRAS family transcription factor /// GRAS family transcription factor	-	1e+0	At5g27860	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e+1	30	Triticum aestivum	TaAffx.59551.1.S1_at	CA599042	-	-	1e+0	At1g74860	unknown protein	C.G.	S.X.	Please select
0.04	2e+1	28	Vitis vinifera	1616799_at	CB974820	-	-	2e+0	At4g21870	26.5 kDa class P-related heat shock protein (HSP26.5-P)	C.G.	S.X.	Please select
0.03	2e+1	28	Zea mays	ZmAffx.406.7.A1_at	AI670226	-	-	3e+0	At5g51020	CRL (CRUMPLED LEAF)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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