Gene omics information

Query gene ID	Contig2584_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.78	91.2	Contig2584_at	Contig2584	-	-	1e-6	At3g53890	40S ribosomal protein S21 (RPS21B)	S.X.	H.G.	Please select
0.85	94.5	rbags18e07_s_at	rbags18e07	-	-	4e-1	At3g58170	BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)	S.X.	H.G.	Please select
0.85	94.5	Contig7221_s_at	Contig7221	-	-	6e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.77	90.8	Contig19492_at	Contig19492	-	-	5e-1	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	S.X.	H.G.	Please select
0.76	89.8	Contig18703_at	Contig18703	-	-	1e+0	At5g48205	zinc ion binding	S.X.	H.G.	Please select
0.72	87.4	Contig21003_at	Contig21003	-	-	6e+0	At5g17280	unknown protein	S.X.	H.G.	Please select
0.71	87.1	EBem09_SQ001_B21_s_at	EBem09_SQ001_B21	-	-	2e+0	At5g36920	unknown protein	S.X.	H.G.	Please select
0.70	86.0	Contig16972_at	Contig16972	-	-	5e-10	At5g64813	LIP1 (Light Insensitive Period1)	S.X.	H.G.	Please select
0.68	85.1	HS18F06u_s_at	HS18F06u	-	-	7e-14	At2g47610	60S ribosomal protein L7A (RPL7aA)	S.X.	H.G.	Please select
0.67	84.7	Contig19387_at	Contig19387	-	-	2e-1	At3g30580	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.3	96.4	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
4.1	96.2	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM146377	Maythorpe shoot Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.7	95.5	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.5	95.1	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.5	95.1	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.5	95.1	GSM282029	Malting_day1_Merit_rep3	GSE11200	Expression data from malting barley seeds
3.4	94.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.4	94.8	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.3	94.6	GSM146378	Maythorpe shoot Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.68	2e-126	450	S0001100020E11F1_x_at	S0001100020E11F1	-	-	3e+0	At1g66100	thionin, putative	C.G.	S.X.	Please select
0.68	2e-126	450	S0001100020E11F1_at	S0001100020E11F1	-	-	3e+0	At1g66100	thionin, putative	C.G.	S.X.	Please select
0.34	4e-57	220	Contig6112_s_at	Contig6112	-	-	9e-2	At5g27700	structural constituent of ribosome	C.G.	S.X.	Please select
0.34	4e-57	220	Contig6112_at	Contig6112	-	-	9e-2	At5g27700	structural constituent of ribosome	C.G.	S.X.	Please select
0.08	5e-4	44	S0001000056O14F1_at	S0001000056O14F1	-	-	4e+1	At5g60650	unknown protein	C.G.	S.X.	Please select
0.02	8e-3	40	Contig8296_at	Contig8296	-	-	2e-4	At1g20110	zinc finger (FYVE type) family protein	C.G.	S.X.	Please select
0.02	3e-2	38	Contig9890_at	Contig9890	-	-	8e-1	At4g34920	1-phosphatidylinositol phosphodiesterase-related	C.G.	S.X.	Please select
0.02	1e-1	36	Contig12473_at	Contig12473	-	-	7e-1	At3g50040	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Contig5550_at	Contig5550	-	-	1e-7	At3g56460	oxidoreductase, zinc-binding dehydrogenase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	1e-6	54	Arabidopsis thaliana	At3g53890	824556	40S ribosomal protein S21 (RPS21B)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	1e-4	48	Glycine max	PsAffx.CL34Contig2_at	PsAffx.CL34Contig2	-	-	1e+0	At1g13690	ATE1	C.G.	S.X.	Please select
0.47	2e-65	250	Oryza sativa	Os03g0667800	CF320290	-	40S ribosomal protein S21	2e-8	At3g53890	40S ribosomal protein S21 (RPS21B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.27	5e-19	95	Populus trichocarpa	Ptp.1356.1.S1_s_at	CX170395	hypothetical protein	-	4e-28	At3g53890	40S ribosomal protein S21 (RPS21B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.64	3e-155	547	Triticum aestivum	Ta.14324.3.S1_x_at	BJ228983	-	-	1e-3	At5g27700	structural constituent of ribosome	C.G.	S.X.	Please select
0.16	3e-4	44	Vitis vinifera	1610997_at	CD719330	hypothetical protein LOC100266516	-	1e-13	At3g53890	40S ribosomal protein S21 (RPS21B)	C.G.	S.X.	Please select
0.41	1e-66	252	Zea mays	Zm.206.3.S1_a_at	Y09636.1	40S ribosomal subunit protein S21	-	5e-12	At3g53890	40S ribosomal protein S21 (RPS21B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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