Gene omics information

Query gene ID	Contig2575_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.7	Contig2575_s_at	Contig2575	-	-	2e-1	At4g27540	PRA1.H (PRENYLATED RAB ACCEPTOR 1.H)	S.X.	H.G.	Please select
0.73	88.7	Contig3100_at	Contig3100	-	-	1e-5	At4g16830	nuclear RNA-binding protein (RGGA)	S.X.	H.G.	Please select
0.67	84.7	Contig4366_at	Contig4366	-	-	5e-16	At5g49810	MMT	S.X.	H.G.	Please select
0.67	84.7	Contig25764_at	Contig25764	-	-	2e-6	At5g19160	unknown protein	S.X.	H.G.	Please select
0.55	72.0	Contig3102_at	Contig3102	-	-	2e-13	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	S.X.	H.G.	Please select
0.40	53.1	Contig4660_s_at	Contig4660	-	-	2e-14	At1g61700	DNA-directed RNA polymerase II, putative (RPB10)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.7	96.9	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.6	96.8	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.5	96.7	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.9	95.8	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
3.7	95.5	GSM238438	Embryo 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.7	95.5	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.6	95.3	GSM146380	Maythorpe shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.6	95.3	GSM282037	Malting_day1_Morex_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	0	866	Contig2576_at	Contig2576	-	-	2e-38	At2g47470	UNE5 (UNFERTILIZED EMBRYO SAC 5)	C.G.	S.X.	Please select
0.67	4e-137	486	HI08H03r_s_at	HI08H03r	-	-	2e+0	At5g43460	lesion inducing protein-related	C.G.	S.X.	Please select
0.66	3e-113	406	HW06D16u_at	HW06D16u	-	-	6e-1	At3g07230	wound-responsive protein-related	C.G.	S.X.	Please select
0.03	4e-1	34	HVSMEk0015B18r2_s_at	HVSMEk0015B18r2	-	-	5e+0	At2g32600	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.01	4e-1	34	Contig12365_at	Contig12365	-	-	1e-2	At1g14850	NUP155	C.G.	S.X.	Please select
0.03	2e+0	32	HVSMEa0003H08r2_at	HVSMEa0003H08r2	-	-	4e+0	At1g21460	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.03	2e+0	32	HF05B12r_at	HF05B12r	-	-	4e+0	At2g01240	reticulon family protein (RTNLB15)	C.G.	S.X.	Please select
0.01	2e+0	32	Contig12078_at	Contig12078	-	-	4e-6	At3g50380	-	C.G.	S.X.	Please select
0.02	2e+0	32	Contig9328_s_at	Contig9328	-	-	5e-7	At1g60660	CB5LP (CYTOCHROME B5-LIKE PROTEIN)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	Arabidopsis thaliana	At4g27540	828863	PRA1.H (PRENYLATED RAB ACCEPTOR 1.H)	F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;POM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	3e-1	36	Glycine max	GmaAffx.92961.1.S1_at	CF808686	-	-	3e+0	At5g16540	ZFN3 (ZINC FINGER NUCLEASE 3)	C.G.	S.X.	Please select
0.13	2e-40	167	Oryza sativa	Os05g0156300	BU673795	-	Protein disulfide-isomerase precursor (EC 5.3.4.1)(PDI) (Prolyl 4- hydroxylase beta subunit) (Cellularthyroid hormone binding protein) (p55)	2e-1	At1g62670	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	3e-1	36	Populus trichocarpa	PtpAffx.11289.1.A1_at	CV271702	hypothetical protein	-	5e-12	At2g47470	UNE5 (UNFERTILIZED EMBRYO SAC 5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	8e-66	250	Triticum aestivum	Ta.8146.1.S1_at	BJ320719	-	-	6e-30	At2g47470	UNE5 (UNFERTILIZED EMBRYO SAC 5)	C.G.	S.X.	Please select
0.10	7e-2	36	Vitis vinifera	1621981_at	CF204953.1	-	-	4e-1	At1g08710	F-box family protein	C.G.	S.X.	Please select
0.10	4e-10	63	Zea mays	Zm.5668.2.A1_at	BM078778	protein disulfide isomerase	-	4e-8	At2g47470	UNE5 (UNFERTILIZED EMBRYO SAC 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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