CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig25750_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 84.7 Contig25750_at Contig25750 - - 4e+0 At5g07880 SNAP29 S.X. H.G.
0.63 80.3 HVSMEc0011A22r2_at HVSMEc0011A22r2 - - 1e+0 At2g41920 protein kinase family protein S.X. H.G.
0.57 74.9 HVSMEc0013C11r2_at HVSMEc0013C11r2 - - 7e-2 At2g05600 - S.X. H.G.
0.50 66.9 HVSMEc0010O09r2_at HVSMEc0010O09r2 - - 1e+0 At5g28630 glycine-rich protein S.X. H.G.
0.50 66.9 Contig19696_at Contig19696 - - 2e+0 At4g23410 TET5 (TETRASPANIN5) S.X. H.G.
0.44 58.9 HVSMEf0020M03r2_at HVSMEf0020M03r2 - - 4e+0 At1g76980 - S.X. H.G.
0.36 47.1 Contig22141_at Contig22141 - - 3e+0 At3g07440 unknown protein S.X. H.G.
0.33 42.6 Contig26293_at Contig26293 - - 2e+0 At5g37580 - S.X. H.G.
0.33 42.6 Contig15729_at Contig15729 - - 3e-2 At3g11280 myb family transcription factor S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
38.1 99.9 GSM382235 Root_Control1 GSE15295 Mercury toxicity in barley roots
35.6 99.9 GSM382237 Root_Control3 GSE15295 Mercury toxicity in barley roots
22.9 99.8 GSM431572 pathogen isolates: Polymyxa betae - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
19.9 99.7 GSM382236 Root_Control2 GSE15295 Mercury toxicity in barley roots
19.5 99.7 GSM382233 Root_Hg2 GSE15295 Mercury toxicity in barley roots
18.3 99.7 GSM431569 pathogen isolates: Mock inoculated control - rep2 GSE17240 Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
17.8 99.7 GSM431548 pathogen isolates: Mock - rep3 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
16.1 99.6 GSM431547 pathogen isolates: Mock - rep2 GSE17238 Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
15.3 99.6 GSM382232 Root_Hg1 GSE15295 Mercury toxicity in barley roots
14.8 99.5 GSM146366 Maythorpe Root Salt, biological rep 1 GSE6325 Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 1e-4 46 HW01K06u_s_at HW01K06u - - 3e+0 At1g69660 meprin and TRAF homology domain-containing protein / MATH domain-containing protein C.G. S.X.
0.07 1e-4 46 HW01K06u_at HW01K06u - - 3e+0 At1g69660 meprin and TRAF homology domain-containing protein / MATH domain-containing protein C.G. S.X.
0.05 1e-4 46 Contig4483_s_at Contig4483 - - 2e+1 At5g41520 40S ribosomal protein S10 (RPS10B) C.G. S.X.
0.05 1e-4 46 Contig4483_at Contig4483 - - 2e+1 At5g41520 40S ribosomal protein S10 (RPS10B) C.G. S.X.
0.03 1e-1 36 Contig871_s_at Contig871 - - 1e+0 At4g37530 peroxidase, putative C.G. S.X.
0.03 4e-1 34 Contig25015_at Contig25015 - - 4e-1 At5g22555 unknown protein C.G. S.X.
0.02 4e-1 34 Contig5252_at Contig5252 - - 2e-1 At1g78710 unknown protein C.G. S.X.
0.03 2e+0 32 Contig25716_at Contig25716 - - 3e-1 At3g02800 phosphatase/ phosphoprotein phosphatase/ protein tyrosine phosphatase C.G. S.X.
0.03 2e+0 32 Contig25699_at Contig25699 - - 1e+0 At3g09490 chloroplast lumen common family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e+0 32 Arabidopsis thaliana At5g07880 830681 SNAP29 member of mammalian SNAP25 Gene Family, a type of SNARE proteins with two chains. There are three members in Arabidopsis: SNAP30, SNAP29, and SNAP33. - - - C.G. S.X.
0.04 1e+0 34 Glycine max GmaAffx.262.1.S1_at AW349426 - - 8e-1 At3g15040 unknown protein C.G. S.X.
0.12 8e-12 71 Oryza sativa Os.27932.1.S1_at - - - 0 C.G. S.X.
0.04 5e+0 32 Populus trichocarpa PtpAffx.224107.1.S1_at pmrna42345 hypothetical protein - 3e+0 At5g55570 unknown protein C.G. S.X.
0.10 7e-14 77 Triticum aestivum Ta.13168.1.S1_a_at CA613639 - - 6e+0 At1g49150 unknown protein C.G. S.X.
0.03 3e-1 34 Vitis vinifera 1614070_at CF214262 hypothetical protein LOC100247788 - 4e-3 At3g14630 CYP72A9 C.G. S.X.
0.03 1e-1 36 Zea mays Zm.19.1.S1_at M57249.1 phospholipid transfer protein homolog1 - 5e+0 At4g32105 galactosyltransferase C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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