Gene omics information

Query gene ID	Contig25736_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig25736_at	Contig25736	-	-	1e+0	At2g46690	auxin-responsive family protein	S.X.	H.G.	Please select
0.52	68.3	Contig7322_at	Contig7322	-	-	2e-3	At3g27310	PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1)	S.X.	H.G.	Please select
0.44	58.9	Contig13081_at	Contig13081	-	-	9e-2	At3g25573	unknown protein	S.X.	H.G.	Please select
0.44	58.9	Contig11312_at	Contig11312	-	-	1e+1	At5g27050	AGL101	S.X.	H.G.	Please select
0.43	56.4	Contig4172_at	Contig4172	-	-	2e-2	At3g52090	NRPB11	S.X.	H.G.	Please select
0.40	53.1	Contig8299_at	Contig8299	-	-	3e-9	At3g20650	mRNA capping enzyme family protein	S.X.	H.G.	Please select
0.36	47.1	Contig13506_at	Contig13506	-	-	1e-1	At3g53310	transcriptional factor B3 family protein	S.X.	H.G.	Please select
0.36	47.1	Contig9136_at	Contig9136	-	-	1e-5	At3g51140	-	S.X.	H.G.	Please select
0.33	42.6	Contig8629_at	Contig8629	-	-	3e-6	At2g17190	ubiquitin family protein	S.X.	H.G.	Please select
0.32	40.3	Contig3633_s_at	Contig3633	-	-	7e-1	At3g13480	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.8	97.0	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.4	96.6	GSM71143	OWB-R stress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.3	96.4	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.3	96.4	GSM71142	OWB-R stress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
4.0	96.0	GSM71144	OWB-R stress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
3.6	95.3	GSM238418	Endosperm 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
3.3	94.6	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
3.2	94.3	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.1	94.1	GSM238432	Embryo 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	1e-29	129	Contig8406_at	Contig8406	-	-	4e-2	At3g10040	transcription factor	C.G.	S.X.	Please select
0.03	6e-1	34	HM10M06r_at	HM10M06r	-	-	3e-1	At1g56040	binding / protein binding / ubiquitin-protein ligase	C.G.	S.X.	Please select
0.01	2e+0	32	Contig16092_at	Contig16092	-	-	3e+0	At5g50200	WR3 (WOUND-RESPONSIVE 3)	C.G.	S.X.	Please select
0.04	9e+0	30	HU09H24u_at	HU09H24u	-	-	5e+0	At5g46770	unknown protein	C.G.	S.X.	Please select
0.01	9e+0	30	Contig8498_at	Contig8498	-	-	6e-8	At4g36390	radical SAM domain-containing protein / TRAM domain-containing protein	C.G.	S.X.	Please select
0.03	9e+0	30	Contig5708_at	Contig5708	-	-	1e+0	At2g47280	pectinesterase	C.G.	S.X.	Please select
0.01	9e+0	30	Contig7853_at	Contig7853	-	-	2e-1	At2g35850	unknown protein	C.G.	S.X.	Please select
0.02	9e+0	30	Contig7123_at	Contig7123	-	-	5e-1	At1g34290	AtRLP5 (Receptor Like Protein 5)	C.G.	S.X.	Please select
0.01	9e+0	30	Contig7083_at	Contig7083	-	-	4e-19	At5g37830	OXP1 (OXOPROLINASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At2g46690	819281	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	Gma.16996.1.A1_at	BE820325	-	-	1e-14	At5g38760	unknown protein	C.G.	S.X.	Please select
0.08	2e-13	77	Oryza sativa	Os11g0163500	AK101154.1	-	Homeodomain-like containing protein	9e-8	At1g21200	transcription factor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-1	38	Populus trichocarpa	PtpAffx.92290.1.S1_at	CK097581	-	-	1e-1	At2g04495	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.43	2e-178	624	Triticum aestivum	Ta.9858.2.S1_at	CA681339	-	-	9e-1	At1g59171	ATP binding / inositol pentakisphosphate 2-kinase	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1609505_at	CB347496	hypothetical protein LOC100259859	-	2e-1	At3g19850	phototropic-responsive NPH3 family protein	C.G.	S.X.	Please select
0.03	8e+0	30	Zea mays	ZmAffx.785.1.A1_at	AI759084	-	-	3e+0	At5g51780	basix helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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