Gene omics information

Query gene ID	Contig25667_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig25667_x_at	Contig25667	-	-	7e-1	At1g24000	Bet v I allergen family protein	S.X.	H.G.	Please select
0.76	89.8	Contig245_s_at	Contig245	-	-	2e+0	At4g16380	metal ion binding	S.X.	H.G.	Please select
0.74	89.1	Contig12986_at	Contig12986	-	-	7e-13	At3g28007	nodulin MtN3 family protein	S.X.	H.G.	Please select
0.72	87.4	HVSMEg0002G01r2_x_at	HVSMEg0002G01r2	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	S.X.	H.G.	Please select
0.60	77.3	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	S.X.	H.G.	Please select
0.59	75.8	HV_CEa0014H05r2_at	HV_CEa0014H05r2	-	-	3e+0	At5g64850	unknown protein	S.X.	H.G.	Please select
0.59	75.8	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.59	75.8	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	S.X.	H.G.	Please select
0.57	74.9	9507414_R_4264-4644_at	9507414_R_4264-4644	-	-	1e+1	At5g06320	NHL3	S.X.	H.G.	Please select
0.54	70.3	HY06F24u_x_at	HY06F24u	-	-	1e+1	At5g05710	pleckstrin homology (PH) domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.9	99.7	GSM160815	drought control rep3	GSE6990	Barley drought stress
15.7	99.6	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
14.5	99.5	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
14.0	99.5	GSM160744	drought control rep2	GSE6990	Barley drought stress
12.2	99.4	GSM261027	ABA-Late-rep1	GSE10328	ABA experiment
11.1	99.2	GSM160464	drought control rep1	GSE6990	Barley drought stress
9.0	98.9	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
8.9	98.9	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
7.9	98.7	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress
7.5	98.6	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.80	3e-94	343	Contig25667_s_at	Contig25667	-	-	7e-1	At1g24000	Bet v I allergen family protein	C.G.	S.X.	Please select
0.05	1e-4	46	Contig6335_at	Contig6335	-	-	5e-2	At1g32260	unknown protein	C.G.	S.X.	Please select
0.02	1e-3	42	Contig4589_at	Contig4589	-	-	6e-30	At2g17290	CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select
0.03	9e-2	36	Contig10700_at	Contig10700	-	-	2e+0	At4g15990	unknown protein	C.G.	S.X.	Please select
0.06	9e-2	36	HV_CEb0011G04r2_x_at	HV_CEb0011G04r2	-	-	6e+0	At3g01250	unknown protein	C.G.	S.X.	Please select
0.06	9e-2	36	HV_CEb0011G04r2_at	HV_CEb0011G04r2	-	-	6e+0	At3g01250	unknown protein	C.G.	S.X.	Please select
0.03	9e-2	36	Contig7916_at	Contig7916	-	-	5e-1	At2g21100	disease resistance-responsive protein-related / dirigent protein-related	C.G.	S.X.	Please select
0.01	4e-1	34	Contig9760_at	Contig9760	-	-	6e-2	At1g64620	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.04	4e-1	34	Contig15649_at	Contig15649	-	-	1e+1	At5g64250	2-nitropropane dioxygenase family / NPD family	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	7e-1	34	Arabidopsis thaliana	At1g24000	839012	Bet v I allergen family protein	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	7e-5	48	Glycine max	GmaAffx.52735.1.S1_at	AW185054	-	-	2e-1	At5g41860	unknown protein	C.G.	S.X.	Please select
0.07	1e-4	48	Oryza sativa	OsAffx.27448.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e+0	34	Populus trichocarpa	PtpAffx.3389.1.S1_at	DN502766	-	-	2e-4	At2g35230	VQ motif-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	3e-25	115	Triticum aestivum	Ta.17028.1.A1_s_at	CK209181	-	-	5e+0	At5g60200	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.04	1e-2	38	Vitis vinifera	1609046_at	CB971729	hypothetical protein LOC100256085	-	1e-13	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select
0.04	5e-3	40	Zea mays	Zm.13362.1.S1_at	CA828313	calmodulin binding protein	-	3e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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