Gene omics information

Query gene ID	Contig25651_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig25651_at	Contig25651	-	-	5e-1	At2g41225	unknown protein	S.X.	H.G.	Please select
0.71	87.1	Contig25401_at	Contig25401	-	-	4e-3	At1g78710	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig13168_at	Contig13168	-	-	3e+0	At5g50130	short-chain dehydrogenase/reductase (SDR) family protein	S.X.	H.G.	Please select
0.43	56.4	Contig13036_at	Contig13036	-	-	6e-1	At3g57000	nucleolar essential protein-related	S.X.	H.G.	Please select
0.30	37.0	Contig6491_at	Contig6491	-	-	6e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select
0.29	35.5	Contig18328_at	Contig18328	-	-	5e-1	Atmg00110	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	98.1	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.3	97.4	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.1	97.3	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
5.1	97.3	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
5.0	97.2	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
4.3	96.4	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
4.0	96.0	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
3.9	95.8	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
3.9	95.8	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
3.8	95.7	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	5e-12	71	HU12F19u_at	HU12F19u	-	-	3e+0	At5g15560	unknown protein	C.G.	S.X.	Please select
0.04	2e-2	40	Contig10392_at	Contig10392	-	-	1e-13	At1g16820	vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related	C.G.	S.X.	Please select
0.02	7e-2	38	Contig2369_s_at	Contig2369	-	-	1e-16	At5g23900	60S ribosomal protein L13 (RPL13D)	C.G.	S.X.	Please select
0.02	7e-2	38	Contig5316_at	Contig5316	-	-	5e-1	At1g11572	-	C.G.	S.X.	Please select
0.02	7e-2	38	Contig13783_at	Contig13783	-	-	4e-1	At2g41225	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Contig10116_at	Contig10116	-	-	3e-9	At5g15440	EDL1 (EID1-like 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Contig8331_s_at	Contig8331	-	-	2e-5	At1g55255	-	C.G.	S.X.	Please select
0.02	1e+0	34	Contig7564_at	Contig7564	-	-	4e-5	At2g32080	PUR ALPHA-1	C.G.	S.X.	Please select
0.02	1e+0	34	Contig4732_s_at	Contig4732	-	-	3e-8	At4g31580	SRZ-22	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	36	Arabidopsis thaliana	At2g41225	6240955	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	7e-1	36	Glycine max	GmaAffx.7805.1.S1_at	BE211290	-	-	9e-1	At2g41225	unknown protein	C.G.	S.X.	Please select
0.06	3e-19	97	Oryza sativa	Os02g0222100	AK110984.1	-	Cysteine synthase (EC 4.2.99.8)	1e+0	At3g04940	CYSD1 (CYSTEINE SYNTHASE D1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.84357.1.A1_at	CK088403	hypothetical protein	-	5e-12	At4g22930	PYR4 (PYRIMIDIN 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e-4	48	Triticum aestivum	TaAffx.12882.1.S1_at	BJ219954	-	-	2e+0	At3g22460	OASA2 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1611682_at	CB036119	-	-	3e-2	At1g69040	ACR4 (ACT REPEAT 4)	C.G.	S.X.	Please select
0.02	2e-1	36	Zea mays	Zm.9790.1.A1_at	CO523101	hypothetical protein LOC100192495	-	1e+0	At2g41225	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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