Gene omics information

Query gene ID	Contig25541_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig25541_at	Contig25541	-	-	1e+0	At3g61210	embryo-abundant protein-related	S.X.	H.G.	Please select
0.12	10.4	Contig15956_at	Contig15956	-	-	7e-1	At4g00130	-	S.X.	H.G.	Please select
0.04	3.4	Contig10118_at	Contig10118	-	-	1e-1	At1g53620	unknown protein	S.X.	H.G.	Please select
0.04	3.4	Contig18744_at	Contig18744	-	-	2e+0	At5g41630	F-box family protein	S.X.	H.G.	Please select
0.02	1.8	Contig19576_x_at	Contig19576	-	-	5e-1	At2g29910	F-box family protein	S.X.	H.G.	Please select
0.02	1.8	Contig7061_s_at	Contig7061	-	-	3e-1	At1g12440	zinc finger (AN1-like) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.5	98.6	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
6.1	98.0	GSM372993	genotype: 11542 - pathogen isolates: K1 - time: 0 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.2	97.4	GSM372997	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.0	97.2	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
4.6	96.8	GSM372992	genotype: 11542 - pathogen isolates: K1 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6	96.8	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
4.5	96.7	GSM372977	genotype: 11542 - pathogen isolates: 5874 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.4	96.6	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
4.3	96.4	GSM373008	genotype: 11542 - pathogen isolates: K1 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.2	96.3	GSM161148	7% SWC rep3	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	0	686	Contig7444_at	Contig7444	-	-	4e-21	At5g60620	phospholipid/glycerol acyltransferase family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig19293_at	Contig19293	-	-	5e-1	At1g19960	-	C.G.	S.X.	Please select
0.02	3e+0	32	Contig10460_at	Contig10460	-	-	2e+0	At5g51451	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	30	Contig11231_at	Contig11231	-	-	6e-1	At5g25530	DNAJ heat shock protein, putative	C.G.	S.X.	Please select
0.02	1e+1	30	Contig10620_at	Contig10620	-	-	2e-6	At5g49020	PRMT4A (PROTEIN ARGININE METHYLTRANSFERASE 4A)	C.G.	S.X.	Please select
0.01	1e+1	30	Contig8480_at	Contig8480	-	-	1e-21	At5g03540	ATEXO70A1 (exocyst subunit EXO70 family protein A1)	C.G.	S.X.	Please select
0.01	1e+1	30	Contig7318_at	Contig7318	-	-	9e-32	At4g34900	XDH2 (XXANTHINE DEHYDROGENASE 2)	C.G.	S.X.	Please select
0.01	1e+1	30	Contig17628_at	Contig17628	-	-	8e-1	At1g05960	binding	C.G.	S.X.	Please select
0.02	1e+1	30	Contig15334_at	Contig15334	-	-	5e+0	At4g29290	LCR26 (Low-molecular-weight cysteine-rich 26)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At3g61210	825293	embryo-abundant protein-related	F:unknown;P:unknown;C:cellular_component unknown;BPFOMA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	HgAffx.20908.1.S1_at	BI748845	-	-	8e-1	At5g47170	unknown protein	C.G.	S.X.	Please select
0.12	1e-26	121	Oryza sativa	Os07g0531600	AK067845.1	-	Phospholipid/glycerol acyltransferase familyprotein	4e-18	At5g60620	phospholipid/glycerol acyltransferase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e-5	50	Populus trichocarpa	Ptp.3362.1.A1_s_at	CV244867	hypothetical protein	-	2e-95	At5g60620	phospholipid/glycerol acyltransferase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.35	3e-103	375	Triticum aestivum	Ta.7526.1.S1_a_at	BE412144	-	-	1e-24	At5g60620	phospholipid/glycerol acyltransferase family protein	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1611862_at	CF568968	-	-	3e-4	At1g08350	endomembrane protein 70 family protein	C.G.	S.X.	Please select
0.06	3e-15	81	Zea mays	Zm.18069.1.S1_at	CF634514	-	-	1e-18	At5g60620	phospholipid/glycerol acyltransferase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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