Gene omics information

Query gene ID	Contig2550_x_at
Gene name	pathogenesis-related protein 4
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.40	53.1	Contig2550_x_at	Contig2550	pathogenesis-related protein 4	-	4e-4	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	S.X.	H.G.	Please select
0.80	92.5	Contig11899_at	Contig11899	-	-	7e+0	At5g67110	ALC (ALCATRAZ)	S.X.	H.G.	Please select
0.67	84.7	Contig9837_at	Contig9837	-	-	1e-5	At5g57930	APO2 (ACCUMULATION OF PHOTOSYSTEM ONE 2)	S.X.	H.G.	Please select
0.67	84.7	Contig4685_at	Contig4685	-	-	1e-7	At5g06690	WCRKC1 (WCRKC THIOREDOXIN 1)	S.X.	H.G.	Please select
0.60	77.3	Contig8278_at	Contig8278	-	-	1e-3	At3g55260	HEXO1 (BETA-HEXOSAMINIDASE 1)	S.X.	H.G.	Please select
0.53	69.7	Contig7392_at	Contig7392	-	-	4e-15	At1g31190	IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.4	99.7	GSM282025	Control_dryseed_Morex_rep1	GSE11200	Expression data from malting barley seeds
15.1	99.5	GSM372955	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
15.0	99.5	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
14.6	99.5	GSM372995	genotype: 11542 - pathogen isolates: K1 - time: 8 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
14.3	99.5	GSM372951	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.9	99.5	GSM372991	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.9	99.5	GSM372948	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.7	99.4	GSM372949	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.5	99.4	GSM372988	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.0	99.3	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	1e-125	448	Contig2546_at	Contig2546	-	-	6e+0	At5g37250	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.58	2e-105	381	HT05L06u_x_at	HT05L06u	-	-	3e+0	At4g00525	unknown protein	C.G.	S.X.	Please select
0.31	3e-46	184	Contig6576_at	Contig6576	-	-	6e-6	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.31	3e-46	184	Contig6576_s_at	Contig6576	-	-	6e-6	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.36	2e-31	135	HT07J20u_x_at	HT07J20u	-	-	8e+0	At4g12617	unknown protein	C.G.	S.X.	Please select
0.14	2e-16	85	HV_CEa0012K03r2_x_at	HV_CEa0012K03r2	-	-	3e+0	At2g07215	unknown protein	C.G.	S.X.	Please select
0.05	7e-10	63	Contig14078_at	Contig14078	-	-	2e-21	At4g01800	preprotein translocase secA subunit, putative	C.G.	S.X.	Please select
0.04	5e-8	57	Contig21640_at	Contig21640	-	-	5e-1	At1g78340	ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)	C.G.	S.X.	Please select
0.04	2e-7	56	Contig1491_at	Contig1491	-	-	7e+0	At4g20325	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e-4	46	Arabidopsis thaliana	At3g04720	819632	PR4 (PATHOGENESIS-RELATED 4)	Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	PsAffx.C150000018_at	PsAffx.C150000018	-	-	4e+0	At2g10930	unknown protein	C.G.	S.X.	Please select
0.43	6e-69	262	Oryza sativa	Os11g0592000	AK121059.1	-	Barwin	7e-3	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.218748.1.S1_s_at	pmrna34471	hypothetical protein	-	2e-4	At5g61030	GR-RBP3 (glycine-rich RNA-binding protein 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.63	0	704	Triticum aestivum	Ta.9226.1.S1_at	CD915938	Pathogenesis-related protein 4	-	7e+0	At5g45890	SAG12 (SENESCENCE-ASSOCIATED GENE 12)	C.G.	S.X.	Please select
0.10	7e-6	50	Vitis vinifera	1620518_at	CF201341.1	-	-	9e-14	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select
0.39	7e-47	186	Zea mays	Zm.2227.1.A1_at	BM381059	hypothetical protein LOC100191593	-	6e-3	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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