Gene omics information

Query gene ID	Contig25477_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig25477_at	Contig25477	-	-	6e+0	At5g33421	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig19576_x_at	Contig19576	-	-	5e-1	At2g29910	F-box family protein	S.X.	H.G.	Please select
0.44	58.9	Contig1188_s_at	Contig1188	amylase/protease inhibitor	-	6e+0	At5g05120	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.40	53.1	Contig23564_at	Contig23564	-	-	1e+0	At1g09932	phosphoglycerate/bisphosphoglycerate mutase-related	S.X.	H.G.	Please select
0.36	47.1	Contig9642_at	Contig9642	-	-	1e-13	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	S.X.	H.G.	Please select
0.23	26.1	Contig24772_at	Contig24772	-	-	1e-4	At5g63740	zinc finger protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.5	99.9	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
26.0	99.8	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
18.7	99.7	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
18.5	99.7	GSM68904	27 h salt stressed replicate 1	GSE3097	Barley1 salinity stress study
16.2	99.6	GSM160815	drought control rep3	GSE6990	Barley drought stress
14.6	99.5	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
13.8	99.5	GSM261039	Dicktoo-deacclimation-rep1	GSE10329	Low temperature stress in cv. Dicktoo
13.4	99.4	GSM68906	27 h salt stressed replicate 3	GSE3097	Barley1 salinity stress study
13.4	99.4	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
12.5	99.4	GSM261031	Dicktoo-control-rep2	GSE10329	Low temperature stress in cv. Dicktoo

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	4e-21	101	Contig11207_at	Contig11207	-	-	3e+0	At3g12510	unknown protein	C.G.	S.X.	Please select
0.05	2e-1	36	rbah36p13_s_at	rbah36p13	-	-	1e+0	At4g35750	Rho-GTPase-activating protein-related	C.G.	S.X.	Please select
0.02	2e-1	36	D10057_at	D10057	-	-	2e+0	At1g79160	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig19877_at	Contig19877	-	-	6e+0	At5g40370	glutaredoxin, putative	C.G.	S.X.	Please select
0.03	7e-1	34	HU10L12r_at	HU10L12r	-	-	2e+0	At3g22425	IGPD	C.G.	S.X.	Please select
0.02	7e-1	34	Contig22595_at	Contig22595	-	-	1e-3	At5g08580	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.03	7e-1	34	HF14A04r_at	HF14A04r	-	-	2e+0	At5g22240	OFP10	C.G.	S.X.	Please select
0.02	7e-1	34	Contig25441_at	Contig25441	-	-	3e-14	At3g14630	CYP72A9	C.G.	S.X.	Please select
0.02	7e-1	34	Contig13130_at	Contig13130	-	-	6e-1	At4g16380	metal ion binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	6e+0	32	Arabidopsis thaliana	At5g33421	6241316	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-2	40	Glycine max	PsAffx.CL778Contig1_at	PsAffx.CL778Contig1	-	-	7e+0	At2g01080	-	C.G.	S.X.	Please select
0.05	3e+0	34	Oryza sativa	Os08g0262500	AK060990.1	-	Cytochrome P450 family protein	3e+0	At5g25752	RBL11 (RHOMBOID-LIKE PROTEIN 11)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-2	40	Populus trichocarpa	Ptp.7105.1.S1_s_at	DN503246	hypothetical protein	-	5e-3	At1g61740	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.59	2e-110	398	Triticum aestivum	Ta.9114.1.A1_x_at	BQ171909	-	-	3e-1	At5g05950	MEE60 (maternal effect embryo arrest 60)	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1613520_at	CF372514	hypothetical protein LOC100257324	-	1e-6	At1g11545	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.7090.1.S1_at	AY105718.1	hypothetical protein LOC100191899	-	6e+0	At5g01740	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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