Gene omics information

Query gene ID	Contig25441_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.98	100.0	Contig25441_at	Contig25441	-	-	3e-14	At3g14630	CYP72A9	S.X.	H.G.	Please select
0.49	63.7	HK05P12r_x_at	HK05P12r	-	-	2e+0	At2g06925	PLA2-ALPHA	S.X.	H.G.	Please select
0.45	59.3	Contig9293_at	Contig9293	-	-	9e-16	At2g43770	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.39	50.5	Contig4085_at	Contig4085	-	-	4e-4	At2g37120	DNA-binding S1FA family protein	S.X.	H.G.	Please select
0.39	50.5	HK06E16r_s_at	HK06E16r	-	-	3e+0	At5g51520	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.35	45.1	Contig20361_at	Contig20361	-	-	1e+0	At5g48560	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.34	43.6	Contig22937_at	Contig22937	-	-	6e-4	At4g33530	KUP5	S.X.	H.G.	Please select
0.33	42.6	HVSMEl0002L06r2_at	HVSMEl0002L06r2	-	-	3e-1	At4g19270	unknown protein	S.X.	H.G.	Please select
0.32	40.3	Contig378_s_at	Contig378	-	-	2e+0	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	S.X.	H.G.	Please select
0.30	37.0	Contig16153_at	Contig16153	-	-	1e+0	At1g27760	interferon-related developmental regulator family protein / IFRD protein family	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.8	99.1	GSM398275	Moroc9-75_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
9.1	98.9	GSM398273	Moroc9-75_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.6	98.8	GSM398274	Moroc9-75_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.8	98.6	GSM398281	Moroc9-75_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.5	98.6	GSM261059	Xantha b-12 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.2	98.5	GSM398283	Moroc9-75_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
7.0	98.4	GSM398282	Moroc9-75_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.3	98.1	GSM261060	Xantha b-12 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.0	97.9	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.6	97.7	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	4e-27	121	HVSMEa0013F14r2_at	HVSMEa0013F14r2	-	-	8e-5	At3g14680	CYP72A14	C.G.	S.X.	Please select
0.07	1e-11	69	Contig3160_at	Contig3160	-	-	1e-5	At3g14650	CYP72A11	C.G.	S.X.	Please select
0.03	7e-10	63	Contig5665_at	Contig5665	-	-	9e-1	At2g46950	CYP709B2	C.G.	S.X.	Please select
0.18	3e-9	61	Contig17284_at	Contig17284	-	-	6e-2	At3g14650	CYP72A11	C.G.	S.X.	Please select
0.14	3e-9	61	Contig20974_at	Contig20974	-	-	7e-6	At3g14650	CYP72A11	C.G.	S.X.	Please select
0.15	1e-8	59	HVSMEf0014D09r2_at	HVSMEf0014D09r2	-	-	4e+0	At3g11825	-	C.G.	S.X.	Please select
0.15	3e-6	52	Contig15063_at	Contig15063	-	-	2e+0	At4g13690	unknown protein	C.G.	S.X.	Please select
0.15	3e-6	52	Contig15063_s_at	Contig15063	-	-	2e+0	At4g13690	unknown protein	C.G.	S.X.	Please select
0.07	4e-5	48	HV_CEb0021B17f2_x_at	HV_CEb0021B17f2	-	-	9e-1	At3g14630	CYP72A9	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	3e-14	79	Arabidopsis thaliana	At3g14630	820691	CYP72A9	putative cytochrome P450	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	PsAffx.psZG005xA14f_at	PsAffx.psZG005xA14f	-	-	8e-1	At1g21520	unknown protein	C.G.	S.X.	Please select
0.29	1e-36	155	Oryza sativa	Os.33102.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	8e-3	42	Populus trichocarpa	PtpAffx.133870.1.A1_at	CV258749	cytochrome P450	-	6e-1	At2g28370	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.41	1e-25	117	Triticum aestivum	TaAffx.82097.1.S1_at	CA677606	-	-	1e+0	At2g42540	COR15A (COLD-REGULATED 15A)	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1609166_at	CF517180	hypothetical protein LOC100249305	-	7e-3	At3g14630	CYP72A9	C.G.	S.X.	Please select
0.30	1e-63	242	Zea mays	Zm.1555.1.A1_at	BM347846	-	-	2e-4	At3g14660	CYP72A13	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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