CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig25401_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.1 Contig25401_at Contig25401 - - 4e-3 At1g78710 unknown protein S.X. H.G.
0.55 72.0 Contig25651_at Contig25651 - - 5e-1 At2g41225 unknown protein S.X. H.G.
0.48 63.2 Contig18328_at Contig18328 - - 5e-1 Atmg00110 - S.X. H.G.
0.47 62.2 Contig23171_at Contig23171 - - 2e+0 At1g11570 nuclear transport factor 2 (NTF2), putative S.X. H.G.
0.46 61.0 Contig13168_at Contig13168 - - 3e+0 At5g50130 short-chain dehydrogenase/reductase (SDR) family protein S.X. H.G.
0.29 35.5 Contig12656_s_at Contig12656 - - 8e+0 At5g45830 DOG1 (DELAY OF GERMINATION 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.8 99.1 GSM372981 genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.6 98.2 GSM372964 genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.6 98.2 GSM372973 genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.5 98.2 GSM373001 genotype: 11542 - pathogen isolates: K1 - time: 20 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.2 98.0 GSM372984 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.2 97.4 GSM372983 genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.1 97.3 GSM161148 7% SWC rep3 GSE6990 Barley drought stress
5.0 97.2 GSM372998 genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.8 97.0 GSM372942 genotype: Mla6 - pathogen isolates: 5874 - time: 8 - rep2 GSE14930 Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.6 96.8 GSM261025 ABA-Early-rep2 GSE10328 ABA experiment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.97 0 1019 Contig25401_s_at Contig25401 - - 4e-3 At1g78710 unknown protein C.G. S.X.
0.67 0 650 Contig25764_at Contig25764 - - 2e-6 At5g19160 unknown protein C.G. S.X.
0.06 1e-1 36 Contig21127_at Contig21127 - - 6e-3 At3g12060 unknown protein C.G. S.X.
0.03 5e-1 34 Contig2007_s_at Contig2007 - - 3e-5 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) C.G. S.X.
0.04 2e+0 32 EBca01_SQ004_P03_x_at EBca01_SQ004_P03 - - 2e+0 At1g06960 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative C.G. S.X.
0.04 2e+0 32 EBca01_SQ004_P03_s_at EBca01_SQ004_P03 - - 2e+0 At1g06960 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative C.G. S.X.
0.04 2e+0 32 EBca01_SQ004_P03_at EBca01_SQ004_P03 - - 2e+0 At1g06960 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative C.G. S.X.
0.01 2e+0 32 Contig4464_at Contig4464 - - 1e-27 At5g59420 ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C) C.G. S.X.
0.03 8e+0 30 Contig23558_at Contig23558 - - 7e-1 At3g15270 SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-3 42 Arabidopsis thaliana At1g78710 844207 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PF - - - C.G. S.X.
0.10 4e-10 65 Glycine max GmaAffx.35475.1.S1_at AW423408 - - 2e-7 At5g19160 unknown protein C.G. S.X.
0.08 2e-28 127 Oryza sativa Os01g0880400 AK066678.1 - Protein of unknown function DUF231 domaincontaining protein 3e-1 At3g54260 unknown protein C.G. S.X.
0.10 4e-7 56 Populus trichocarpa PtpAffx.138581.1.A1_at DN492072 hypothetical protein - 9e-3 At3g14850 unknown protein C.G. S.X.
0.24 4e-25 115 Triticum aestivum TaAffx.29004.1.S1_at CA652679 - - 8e-1 At4g15940 fumarylacetoacetate hydrolase family protein C.G. S.X.
0.07 2e-2 38 Vitis vinifera 1612064_at CF213487 hypothetical protein LOC100251081 - 2e-8 At2g31110 unknown protein C.G. S.X.
0.13 5e-13 73 Zea mays Zm.16573.2.A1_at CF623695 hypothetical protein LOC100275749 - 1e-3 At1g78710 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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