Gene omics information

Query gene ID Contig25390_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.1Contig25390_atContig25390--6e+0At1g06330copper-binding family proteinS.X.H.G.
0.8092.5Contig15846_atContig15846--3e+0At5g27910NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8)S.X.H.G.
0.8092.5Contig17954_atContig17954--2e+0At3g63050unknown proteinS.X.H.G.
0.5572.0Contig18560_atContig18560--2e-9At3g24590PLSP1 (plastidic type I signal peptidase 1)S.X.H.G.
0.3342.6EBro04_SQ003_G13_atEBro04_SQ003_G13--2e+0At5g44450methyltransferaseS.X.H.G.
0.2935.5HVSMEa0003G10r2_atHVSMEa0003G10r2--7e-1At3g50070CYCD3S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
11.999.3GSM238435Embryo 24 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grains
5.697.7GSM238427Endosperm 72 h; Seed germination; Rep 2GSE9365Expression data from barley maturing and germinating grains
5.697.7GSM261076Albina e-16 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.497.5GSM238409Pericarp 4DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
5.397.4GSM213443Barley seeds with P. aeruginosa PA5021 mutant for 12hrGSE8618P. aeruginosa virulent factor to barley
5.197.3GSM213441Barley seeds control in Hoagland solution for 12hrGSE8618P. aeruginosa virulent factor to barley
4.696.8GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
4.696.8GSM261064Xantha s-46 Control rep3GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.496.6GSM238431Embryo 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
4.096.0GSM16082319% SWC rep1GSE6990Barley drought stress
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.027e-134Contig16674_atContig16674--4e-1At5g40770ATPHB3 (PROHIBITIN 3)C.G.S.X.
0.023e+032Contig398_s_atContig398--7e-13At2g44050COS1 (COI1 SUPPRESSOR1)C.G.S.X.
0.033e+032HT05P05u_s_atHT05P05u--3e+0At3g53850-C.G.S.X.
0.023e+032Contig10973_atContig10973--6e-3At1g79260unknown proteinC.G.S.X.
0.013e+032Contig10165_atContig10165--1e-11At1g55900TIM50C.G.S.X.
0.033e+032HT05P05u_atHT05P05u--3e+0At3g53850-C.G.S.X.
0.023e+032Contig22890_atContig22890--1e+0At1g30460CPSF30C.G.S.X.
0.023e+032Contig18010_atContig18010--5e-2At3g27820MDAR4 (MONODEHYDROASCORBATE REDUCTASE 4)C.G.S.X.
0.023e+032Contig12975_atContig12975--6e-16At3g56440AtATG18dC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.036e+032Arabidopsis thalianaAt1g06330837144copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:cellular_component unknown;PBMF---C.G.S.X.
0.032e+034Glycine maxGmaAffx.3555.1.A1_atBE822406--3e+0At4g08485-C.G.S.X.
0.125e-1169Oryza sativaOs.24382.1.A1_at---0C.G.S.X.
0.042e+034Populus trichocarpaPtpAffx.200948.1.S1_x_atpmrna1863hypothetical protein-2e+0At5g16450dimethylmenaquinone methyltransferase family proteinC.G.S.X.
0.036e+032Triticum aestivumTaAffx.92763.1.S1_atBJ248622--4e+0At2g22425peptidaseC.G.S.X.
0.032e+032Vitis vinifera1622292_atCF403386hypothetical protein LOC100263206-1e+0At5g43380TOPP6C.G.S.X.
0.029e+030Zea maysZm.9833.1.A1_atBM340516--2e+1At4g11870unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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