Gene omics information

Query gene ID	Contig25371_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	Contig25371_at	Contig25371	-	-	4e+0	At4g17170	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)	S.X.	H.G.	Please select
0.67	84.7	Contig4991_s_at	Contig4991	-	-	1e-9	At1g79440	ALDH5F1	S.X.	H.G.	Please select
0.50	66.9	Contig5876_at	Contig5876	-	-	2e-4	At4g34138	UGT73B1 (UDP-glucosyl transferase 73B1)	S.X.	H.G.	Please select
0.46	61.0	HV10D22r_at	HV10D22r	-	-	3e+0	At4g19480	unknown protein	S.X.	H.G.	Please select
0.33	42.6	rbah29m06_s_at	rbah29m06	-	-	4e-1	At1g54050	17.4 kDa class III heat shock protein (HSP17.4-CIII)	S.X.	H.G.	Please select
0.07	5.8	Contig7997_at	Contig7997	-	-	1e-4	At1g09740	ethylene-responsive protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.9	99.9	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
25.4	99.8	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
24.7	99.8	GSM398259	Martin_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
23.3	99.8	GSM213441	Barley seeds control in Hoagland solution for 12hr	GSE8618	P. aeruginosa virulent factor to barley
20.8	99.7	GSM398257	Martin_3d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
17.7	99.7	GSM398256	Martin_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
16.3	99.6	GSM213436	Barley seeds with P. aeruginosa PAO1 for 12hr	GSE8618	P. aeruginosa virulent factor to barley
14.5	99.5	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
14.3	99.5	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
13.9	99.5	GSM311255	hsp5_with_aphids_3	GSE12584	Microarray analysis of the interaction between Rhopalosiphum padi and partially resistant or susceptible barley lines

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-2	38	Contig2119_at	Contig2119	-	-	9e-9	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.03	1e-1	36	Contig5005_at	Contig5005	-	-	3e-5	At2g27550	ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)	C.G.	S.X.	Please select
0.03	1e-1	36	Contig2586_at	Contig2586	-	-	2e+0	At5g01075	beta-galactosidase	C.G.	S.X.	Please select
0.02	1e-1	36	Contig2112_at	Contig2112	-	-	1e-8	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.03	5e-1	34	Contig21793_at	Contig21793	-	-	1e-7	At5g43170	AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3)	C.G.	S.X.	Please select
0.01	5e-1	34	Contig6574_at	Contig6574	-	-	2e-2	At5g01180	PTR5 (PEPTIDE TRANSPORTER 5)	C.G.	S.X.	Please select
0.01	2e+0	32	Contig9708_at	Contig9708	-	-	2e-1	At4g13100	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig7963_at	Contig7963	-	-	9e-12	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig21775_at	Contig21775	-	-	3e+1	At5g20740	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At4g17170	827428	RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)	member of RAB gene family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	GmaAffx.76319.1.S1_at	BE473558	-	-	2e-4	At3g04820	pseudouridine synthase	C.G.	S.X.	Please select
0.04	6e-1	36	Oryza sativa	OsAffx.5371.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	Ptp.4552.1.S1_at	DN500352	-	-	9e-1	At5g01230	FtsJ-like methyltransferase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	1e-3	44	Triticum aestivum	TaAffx.51129.1.S1_at	CA730664	-	-	3e-1	At4g10970	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1617719_at	CB975632	hypothetical protein LOC100248032	-	2e-86	At3g02230	RGP1 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 1)	C.G.	S.X.	Please select
0.04	5e-1	34	Zea mays	Zm.17373.1.S1_at	CK371686	hypothetical protein LOC100193946	-	1e+0	At3g01319	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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