Gene omics information

Query gene ID	Contig25340_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig25340_at	Contig25340	-	-	8e-36	At1g31800	CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)	S.X.	H.G.	Please select
0.67	84.7	Contig13518_at	Contig13518	-	-	3e-12	At5g20490	XIK	S.X.	H.G.	Please select
0.67	84.7	Contig22909_at	Contig22909	-	-	3e-2	At1g20550	unknown protein	S.X.	H.G.	Please select
0.61	78.7	Contig13519_at	Contig13519	-	-	7e-1	At3g14750	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig13749_x_at	Contig13749	-	-	1e+0	At1g64295	F-box family protein-related	S.X.	H.G.	Please select
0.22	24.2	HV06K22u_at	HV06K22u	-	-	9e+0	At3g49645	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.0	99.9	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
27.5	99.8	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
23.6	99.8	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
13.4	99.4	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
13.4	99.4	GSM261061	Xantha b-12 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.2	99.4	GSM398270	HS41-1_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.7	98.9	GSM363463	5 mM B(OH)3 treatment (5B) - rep1	GSE14521	Late response to boron toxicity in barley leaves
7.6	98.6	GSM261064	Xantha s-46 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.4	98.5	GSM398267	HS41-1_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.5	98.2	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	3e-151	533	Contig2360_at	Contig2360	-	-	2e-27	At1g31800	CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)	C.G.	S.X.	Please select
0.19	6e-60	230	Contig14804_s_at	Contig14804	-	-	2e-11	At1g31800	CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)	C.G.	S.X.	Please select
0.19	6e-60	230	Contig14804_at	Contig14804	-	-	2e-11	At1g31800	CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)	C.G.	S.X.	Please select
0.30	8e-56	216	HV_CEb0010M12r2_at	HV_CEb0010M12r2	-	-	9e-1	At3g49115	unknown protein	C.G.	S.X.	Please select
0.16	4e-33	141	Contig9283_at	Contig9283	-	-	1e-11	At5g16940	carbon-sulfur lyase	C.G.	S.X.	Please select
0.19	2e-31	135	HF01O23T_at	HF01O23T	-	-	4e+0	At3g17950	unknown protein	C.G.	S.X.	Please select
0.17	2e-28	125	Contig13264_at	Contig13264	-	-	2e+0	At3g55860	unknown protein	C.G.	S.X.	Please select
0.21	2e-25	115	Contig20482_at	Contig20482	-	-	1e+0	At4g39940	AKN2 (APS-kinase 2)	C.G.	S.X.	Please select
0.04	5e-8	57	Contig17311_at	Contig17311	-	-	4e-1	At3g20120	CYP705A21	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.15	8e-36	151	Arabidopsis thaliana	At1g31800	840067	CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)	Encodes a protein with β-ring carotenoid hydroxylase activity.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	6e-13	75	Glycine max	GmaAffx.73107.1.S1_at	BM892469	-	-	1e-51	At1g31800	CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)	C.G.	S.X.	Please select
0.14	9e-99	361	Oryza sativa	Os02g0817900	AK068163.1	-	Chloroplast carotenoid epsilon-ring hydroxylase	3e-18	At1g31800	CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.22	5e-38	159	Populus trichocarpa	PtpAffx.223387.1.S1_at	pmrna41365	-	-	3e-133	At1g31800	CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.29	4e-87	321	Triticum aestivum	Ta.9846.1.A1_at	BJ233019	-	-	2e-21	At1g31800	CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1620568_at	BQ799876	-	-	4e-15	At1g72330	ALAAT2 (ALANINE AMINOTRANSFERASE 2)	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	ZmAffx.688.1.A1_at	AI737201	-	-	5e-2	At1g11650	RNA-binding protein 45 (RBP45), putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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