Gene omics information

Query gene ID	Contig25330_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig25330_at	Contig25330	-	-	1e+0	At1g73280	scpl3 (serine carboxypeptidase-like 3)	S.X.	H.G.	Please select
0.14	12.9	Contig12245_at	Contig12245	-	-	6e+0	At5g55870	unknown protein	S.X.	H.G.	Please select
0.07	5.8	Contig22529_at	Contig22529	-	-	1e-58	Atcg00740	-	S.X.	H.G.	Please select
0.06	4.8	Contig7666_at	Contig7666	-	-	3e-3	At5g67400	peroxidase 73 (PER73) (P73) (PRXR11)	S.X.	H.G.	Please select
0.01	1.1	Contig24962_at	Contig24962	-	-	6e+0	At5g15581	unknown protein	S.X.	H.G.	Please select
0.00	0.2	rbaal31o15_at	rbaal31o15	-	-	3e-1	At1g77650	F-box family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.4	99.6	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
17.4	99.6	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
15.9	99.6	GSM160744	drought control rep2	GSE6990	Barley drought stress
14.0	99.5	GSM160815	drought control rep3	GSE6990	Barley drought stress
11.1	99.2	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
10.9	99.2	GSM160464	drought control rep1	GSE6990	Barley drought stress
10.9	99.2	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
10.6	99.2	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
10.6	99.2	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
10.5	99.2	GSM68900	8 h salt stressed replicate 3	GSE3097	Barley1 salinity stress study

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	1166	Contig25330_s_at	Contig25330	-	-	1e+0	At1g73280	scpl3 (serine carboxypeptidase-like 3)	C.G.	S.X.	Please select
0.17	2e-25	115	Contig6814_at	Contig6814	-	-	7e-9	At5g59140	SKP1 family protein	C.G.	S.X.	Please select
0.25	8e-25	113	HF21P16r_at	HF21P16r	-	-	3e+0	At4g00420	double-stranded RNA-binding domain (DsRBD)-containing protein	C.G.	S.X.	Please select
0.13	8e-25	113	Contig13559_at	Contig13559	-	-	7e-29	At4g08790	nitrilase, putative	C.G.	S.X.	Please select
0.18	5e-23	107	HU11J14u_at	HU11J14u	-	-	4e+0	At5g19900	PRLI-interacting factor, putative	C.G.	S.X.	Please select
0.11	3e-21	101	Contig6815_at	Contig6815	-	-	6e-11	At3g06170	TMS membrane family protein / tumour differentially expressed (TDE) family protein	C.G.	S.X.	Please select
0.13	5e-20	97	Contig3168_at	Contig3168	-	-	1e-24	At5g60860	AtRABA1f (Arabidopsis Rab GTPase homolog A1f)	C.G.	S.X.	Please select
0.14	7e-19	93	Contig10489_at	Contig10489	-	-	4e-2	At5g19930	integral membrane family protein	C.G.	S.X.	Please select
0.08	4e-17	87	Contig14137_at	Contig14137	-	-	2e-1	At5g66780	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At1g73280	843662	scpl3 (serine carboxypeptidase-like 3)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	1e-1	38	Glycine max	GmaAffx.60252.1.S1_at	BI321448	-	-	6e-9	At3g12203	scpl17 (serine carboxypeptidase-like 17)	C.G.	S.X.	Please select
0.14	7e-10	65	Oryza sativa	Os.5061.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-1	38	Populus trichocarpa	PtpAffx.214724.1.S1_s_at	pmrna28552	hypothetical protein	-	5e-10	At3g25420	scpl21 (serine carboxypeptidase-like 21)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	9e-14	77	Triticum aestivum	TaAffx.39302.1.A1_at	BG909701	-	-	1e+1	At5g53860	emb2737 (embryo defective 2737)	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1610450_at	CD717368	-	-	1e+0	At1g76955	Expressed protein	C.G.	S.X.	Please select
0.05	5e-1	34	Zea mays	Zm.18292.1.A1_at	CO528565	hypothetical protein LOC100191502	-	2e+0	At1g51915	cryptdin protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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