Gene omics information

Query gene ID Contig2532_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6784.7Contig2532_atContig2532--5e-8At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)S.X.H.G.
0.8995.4Contig10001_atContig10001--9e-6At3g01410RNase H domain-containing proteinS.X.H.G.
0.8293.1Contig10000_s_atContig10000--8e+0At5g05113unknown proteinS.X.H.G.
0.7891.2Contig19674_atContig19674--9e-2At3g25600calcium ion bindingS.X.H.G.
0.7891.2Contig10380_atContig10380--4e-1At1g17880nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putativeS.X.H.G.
0.7086.0Contig20672_x_atContig20672--5e+0At5g54430universal stress protein (USP) family proteinS.X.H.G.
0.6380.3Contig10382_s_atContig10382--6e-38At5g45190cyclin family proteinS.X.H.G.
0.6178.7Contig10383_atContig10383--6e-4At2g22540SVP (SHORT VEGETATIVE PHASE)S.X.H.G.
0.4153.9Contig10417_atContig10417--2e-16At4g21860MSRB2 (methionine sulfoxide reductase B 2)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
17.999.7GSM261022ABA-Control-rep2GSE10328ABA experiment
14.699.5GSM261024ABA-Early-rep1GSE10328ABA experiment
13.199.4GSM261027ABA-Late-rep1GSE10328ABA experiment
13.199.4GSM16081938% SWC rep1GSE6990Barley drought stress
12.799.4GSM261021ABA-Control-rep1GSE10328ABA experiment
10.999.2GSM261028ABA-Late-rep2GSE10328ABA experiment
10.899.2GSM419976Palea_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spike
10.899.2GSM440964Control palea_Rep2GSE17669Gene expression in the barley spike during drought stress
8.998.9GSM688998 h salt stressed replicate 2GSE3097Barley1 salinity stress study
8.798.9GSM16082238% SWC rep3GSE6990Barley drought stress
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.393e-174611Contig2528_x_atContig2528--5e+0At1g15825hydroxyproline-rich glycoprotein family proteinC.G.S.X.
0.412e-169595Contig2539_x_atContig2539--5e+0At4g24300peptidaseC.G.S.X.
0.412e-169595Contig2539_s_atContig2539--5e+0At4g24300peptidaseC.G.S.X.
0.382e-144511Contig2535_s_atContig2535--3e-1At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)C.G.S.X.
0.175e-68258HVSMEn0024N16f_atHVSMEn0024N16f--2e-8At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)C.G.S.X.
0.241e-25117Contig5313_s_atContig5313--1e+0At4g1500060S ribosomal protein L27 (RPL27C)C.G.S.X.
0.224e-25115Contig5312_atContig5312--1e+1At5g54500FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)C.G.S.X.
0.111e-22107HVSMEn0003K24f2_x_atHVSMEn0003K24f2--3e+0At4g24300peptidaseC.G.S.X.
0.111e-22107HVSMEn0003K24f2_atHVSMEn0003K24f2--3e+0At4g24300peptidaseC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.125e-859Arabidopsis thalianaAt5g54160835504ATOMT1 (O-METHYLTRANSFERASE 1)A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase---C.G.S.X.
0.062e-861Glycine maxGma.6550.2.S1_x_atBM086044--2e-14At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)C.G.S.X.
0.585e-102373Oryza sativaOs08g0157500AK064768.1-Caffeic acid 3-O-methyltransferase (EC 2.1.1.68)(S-adenosysl-L- methionine:caffeic acid3-O-methyltransferase) (COMT) (CAOMT)2e-7At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)C.G.S.X.
0.063e-448Populus trichocarpaPtpAffx.141260.2.A1_atCV261308caffeic acid 3-O-methyltransferase-4e-23At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)C.G.S.X.
0.7001384Triticum aestivumTa.336.1.S1_x_atAY226581.1caffeic acid O-methyltransferase-1e-8At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)C.G.S.X.
0.074e-1271Vitis vinifera1619450_s_atCF215109hypothetical protein LOC100258977-6e-63At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)C.G.S.X.
0.354e-68258Zea maysZm.1502.1.A1_atCF637870flavonoid O-methyltransferase-2e+0At3g09032unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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