CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig2532_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 84.7 Contig2532_at Contig2532 - - 5e-8 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) S.X. H.G.
0.89 95.4 Contig10001_at Contig10001 - - 9e-6 At3g01410 RNase H domain-containing protein S.X. H.G.
0.82 93.1 Contig10000_s_at Contig10000 - - 8e+0 At5g05113 unknown protein S.X. H.G.
0.78 91.2 Contig19674_at Contig19674 - - 9e-2 At3g25600 calcium ion binding S.X. H.G.
0.78 91.2 Contig10380_at Contig10380 - - 4e-1 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative S.X. H.G.
0.70 86.0 Contig20672_x_at Contig20672 - - 5e+0 At5g54430 universal stress protein (USP) family protein S.X. H.G.
0.63 80.3 Contig10382_s_at Contig10382 - - 6e-38 At5g45190 cyclin family protein S.X. H.G.
0.61 78.7 Contig10383_at Contig10383 - - 6e-4 At2g22540 SVP (SHORT VEGETATIVE PHASE) S.X. H.G.
0.41 53.9 Contig10417_at Contig10417 - - 2e-16 At4g21860 MSRB2 (methionine sulfoxide reductase B 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.9 99.7 GSM261022 ABA-Control-rep2 GSE10328 ABA experiment
14.6 99.5 GSM261024 ABA-Early-rep1 GSE10328 ABA experiment
13.1 99.4 GSM261027 ABA-Late-rep1 GSE10328 ABA experiment
13.1 99.4 GSM160819 38% SWC rep1 GSE6990 Barley drought stress
12.7 99.4 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
10.9 99.2 GSM261028 ABA-Late-rep2 GSE10328 ABA experiment
10.8 99.2 GSM419976 Palea_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
10.8 99.2 GSM440964 Control palea_Rep2 GSE17669 Gene expression in the barley spike during drought stress
8.9 98.9 GSM68899 8 h salt stressed replicate 2 GSE3097 Barley1 salinity stress study
8.7 98.9 GSM160822 38% SWC rep3 GSE6990 Barley drought stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 3e-174 611 Contig2528_x_at Contig2528 - - 5e+0 At1g15825 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.41 2e-169 595 Contig2539_x_at Contig2539 - - 5e+0 At4g24300 peptidase C.G. S.X.
0.41 2e-169 595 Contig2539_s_at Contig2539 - - 5e+0 At4g24300 peptidase C.G. S.X.
0.38 2e-144 511 Contig2535_s_at Contig2535 - - 3e-1 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) C.G. S.X.
0.17 5e-68 258 HVSMEn0024N16f_at HVSMEn0024N16f - - 2e-8 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) C.G. S.X.
0.24 1e-25 117 Contig5313_s_at Contig5313 - - 1e+0 At4g15000 60S ribosomal protein L27 (RPL27C) C.G. S.X.
0.22 4e-25 115 Contig5312_at Contig5312 - - 1e+1 At5g54500 FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) C.G. S.X.
0.11 1e-22 107 HVSMEn0003K24f2_x_at HVSMEn0003K24f2 - - 3e+0 At4g24300 peptidase C.G. S.X.
0.11 1e-22 107 HVSMEn0003K24f2_at HVSMEn0003K24f2 - - 3e+0 At4g24300 peptidase C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 5e-8 59 Arabidopsis thaliana At5g54160 835504 ATOMT1 (O-METHYLTRANSFERASE 1) A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3’-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3’-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase - - - C.G. S.X.
0.06 2e-8 61 Glycine max Gma.6550.2.S1_x_at BM086044 - - 2e-14 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) C.G. S.X.
0.58 5e-102 373 Oryza sativa Os08g0157500 AK064768.1 - Caffeic acid 3-O-methyltransferase (EC 2.1.1.68)(S-adenosysl-L- methionine:caffeic acid3-O-methyltransferase) (COMT) (CAOMT) 2e-7 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) C.G. S.X.
0.06 3e-4 48 Populus trichocarpa PtpAffx.141260.2.A1_at CV261308 caffeic acid 3-O-methyltransferase - 4e-23 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) C.G. S.X.
0.70 0 1384 Triticum aestivum Ta.336.1.S1_x_at AY226581.1 caffeic acid O-methyltransferase - 1e-8 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) C.G. S.X.
0.07 4e-12 71 Vitis vinifera 1619450_s_at CF215109 hypothetical protein LOC100258977 - 6e-63 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) C.G. S.X.
0.35 4e-68 258 Zea mays Zm.1502.1.A1_at CF637870 flavonoid O-methyltransferase - 2e+0 At3g09032 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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