Gene omics information

Query gene ID	Contig25293_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.82	93.1	Contig25293_at	Contig25293	-	-	5e-52	At3g21180	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	S.X.	H.G.	Please select
0.44	58.9	Contig9681_at	Contig9681	-	-	3e-1	At1g62200	proton-dependent oligopeptide transport (POT) family protein	S.X.	H.G.	Please select
0.32	40.3	Contig7657_s_at	Contig7657	-	-	2e-7	At1g27350	-	S.X.	H.G.	Please select
0.32	40.3	Contig7318_at	Contig7318	-	-	9e-32	At4g34900	XDH2 (XXANTHINE DEHYDROGENASE 2)	S.X.	H.G.	Please select
0.27	32.1	Contig11301_at	Contig11301	-	-	9e-2	At3g06420	ATG8H (autophagy 8h)	S.X.	H.G.	Please select
0.27	32.1	Contig10369_at	Contig10369	-	-	3e-19	At5g22740	ATCSLA02	S.X.	H.G.	Please select
0.20	21.1	Contig8838_at	Contig8838	-	-	8e-3	At5g50100	-	S.X.	H.G.	Please select
0.19	19.6	Contig5553_at	Contig5553	-	-	2e+0	At4g15955	epoxide hydrolase-related	S.X.	H.G.	Please select
0.15	14.1	Contig14639_at	Contig14639	-	-	8e+0	At5g47175	LCR3 (Low-molecular-weight cysteine-rich 3)	S.X.	H.G.	Please select
0.14	12.9	Contig7109_at	Contig7109	-	-	1e-1	At2g45480	AtGRF9 (GROWTH-REGULATING FACTOR 9)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.8	99.8	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
23.2	99.8	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
20.5	99.7	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
15.4	99.6	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
13.5	99.5	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
11.6	99.3	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
10.7	99.2	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
10.6	99.2	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.4	99.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.1	98.9	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	6e-50	198	Contig9475_at	Contig9475	-	-	1e-33	At4g29900	ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10)	C.G.	S.X.	Please select
0.24	2e-43	176	Contig6173_at	Contig6173	-	-	2e-36	At3g21180	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	C.G.	S.X.	Please select
0.03	1e-10	67	Contig11449_at	Contig11449	-	-	9e-29	At3g57330	ACA11 (autoinhibited Ca2+-ATPase 11)	C.G.	S.X.	Please select
0.05	6e-10	65	Contig9357_at	Contig9357	-	-	2e-42	At1g27770	ACA1 (AUTO-INHIBITED CA2+-ATPASE 1)	C.G.	S.X.	Please select
0.04	2e-3	44	Contig14714_at	Contig14714	P-type ATPase	-	3e-68	At2g22950	calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7)	C.G.	S.X.	Please select
0.04	3e-2	40	Contig14075_at	Contig14075	-	-	6e-33	At2g41560	ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig5347_at	Contig5347	-	-	1e-3	At1g17770	SUVH7 (SU(VAR)3-9 HOMOLOG 7)	C.G.	S.X.	Please select
0.01	2e+0	34	Contig18221_at	Contig18221	Beta-1,2-xylosyltransferase	-	1e+1	Atmg01200	-	C.G.	S.X.	Please select
0.01	2e+0	34	Contig10027_at	Contig10027	-	-	6e-1	At1g02820	late embryogenesis abundant 3 family protein / LEA3 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	5e-52	206	Arabidopsis thaliana	At3g21180	821671	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	6e-43	176	Glycine max	Gma.3527.1.S1_at	AW733755	-	-	7e-69	At3g21180	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	C.G.	S.X.	Please select
0.54	0	1112	Oryza sativa	Os02g0176700	9630.m00757	-	Potential calcium-transporting ATPase 9, plasmamembrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 9)	4e-47	At3g21180	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	8e-64	246	Populus trichocarpa	Ptp.2372.1.S1_at	CK087471	autoinhibited calcium ATPase	-	3e-59	At3g21180	ACA9 (AUTOINHIBITED CA(2+)-ATPASE 9)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.28	1e-157	557	Triticum aestivum	Ta.18085.1.S1_s_at	CA628318	-	-	8e+0	Atmg00516	-	C.G.	S.X.	Please select
0.21	3e-47	188	Vitis vinifera	1614028_at	CB976052	hypothetical protein LOC100259808	-	1e-55	At5g57110	ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)	C.G.	S.X.	Please select
0.44	0	864	Zea mays	Zm.17277.1.S1_at	CF273093	-	-	1e-45	At5g57110	ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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