Gene omics information

Query gene ID	Contig2521_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	Contig2521_s_at	Contig2521	-	-	4e-21	At1g07770	RPS15A (ribosomal protein s15a)	S.X.	H.G.	Please select
0.50	66.9	Contig23368_at	Contig23368	-	-	1e+0	At4g14780	protein kinase, putative	S.X.	H.G.	Please select
0.50	66.9	Contig18432_at	Contig18432	-	-	8e-4	At1g15140	oxidoreductase NAD-binding domain-containing protein	S.X.	H.G.	Please select
0.40	53.1	Contig9724_at	Contig9724	voltage-dependent outwardly rectifying plasma membrane K+ channel KCO1/TPK1	-	3e-3	At5g55630	ATKCO1	S.X.	H.G.	Please select
0.33	42.6	Contig20960_at	Contig20960	-	-	1e+0	At5g61130	PDCB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1)	S.X.	H.G.	Please select
0.24	27.2	Contig17788_at	Contig17788	-	-	1e+1	At4g11760	LCR17 (Low-molecular-weight cysteine-rich 17)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.6	92.3	GSM372990	genotype: 11542 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
2.6	92.3	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
2.5	91.9	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
2.5	91.9	GSM146375	Maythorpe shoot Control, biological rep1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.5	91.9	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.5	91.9	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.5	91.9	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
2.4	91.4	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.4	91.4	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
2.4	91.4	GSM373005	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	0	739	Contig2522_at	Contig2522	-	-	1e-93	At1g07770	RPS15A (ribosomal protein s15a)	C.G.	S.X.	Please select
0.27	1e-50	198	Contig2523_at	Contig2523	-	-	4e-93	At1g07770	RPS15A (ribosomal protein s15a)	C.G.	S.X.	Please select
0.07	1e-1	36	HW04N01u_at	HW04N01u	-	-	1e-1	At5g38050	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Contig24312_at	Contig24312	-	-	5e+0	At5g28550	-	C.G.	S.X.	Please select
0.01	2e+0	32	Contig9026_at	Contig9026	-	-	1e-3	At5g21160	La domain-containing protein / proline-rich family protein	C.G.	S.X.	Please select
0.04	2e+0	32	S0001100126A06F1_x_at	S0001100126A06F1	-	-	7e-4	At1g32900	starch synthase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Contig13476_at	Contig13476	-	-	2e-25	At2g01320	ABC transporter family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Contig4562_at	Contig4562	-	-	7e-3	At3g03100	NADH:ubiquinone oxidoreductase family protein	C.G.	S.X.	Please select
0.03	2e+0	32	EBro01_SQ004_K17_s_at	EBro01_SQ004_K17	-	-	5e+0	At3g52561	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	4e-21	101	Arabidopsis thaliana	At1g07770	837291	RPS15A (ribosomal protein s15a)	Encodes cytoplasmic ribosomal protein S15a.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	4e-25	115	Glycine max	Gma.8045.1.S1_a_at	BI945653	-	-	6e-21	At1g07770	RPS15A (ribosomal protein s15a)	C.G.	S.X.	Please select
0.22	1e-22	107	Oryza sativa	Os07g0208000	AK062943.1	-	40S ribosomal protein S15a	7e-49	At1g07770	RPS15A (ribosomal protein s15a)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	5e-18	91	Populus trichocarpa	Ptp.4237.1.S1_at	DN499915	hypothetical protein	-	2e-13	At5g59850	40S ribosomal protein S15A (RPS15aF)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.54	8e-146	515	Triticum aestivum	Ta.28388.1.S1_at	CK162361	-	-	3e-82	At1g07770	RPS15A (ribosomal protein s15a)	C.G.	S.X.	Please select
0.23	2e-32	137	Vitis vinifera	1618719_at	CF414912	hypothetical protein LOC100258124	-	1e-71	At3g46040	RPS15AD (ribosomal protein S15A D)	C.G.	S.X.	Please select
0.24	2e-36	151	Zea mays	Zm.1442.3.A1_at	CK371340	hypothetical protein LOC100280177	-	7e-46	At5g59850	40S ribosomal protein S15A (RPS15aF)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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