Gene omics information

Query gene ID	Contig25169_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig25169_at	Contig25169	-	-	4e+0	At4g32590	ferredoxin-related	S.X.	H.G.	Please select
0.27	32.1	Contig11856_at	Contig11856	-	-	3e-6	At4g28500	ANAC073 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 73)	S.X.	H.G.	Please select
0.22	24.2	HVSMEf0002H04r2_at	HVSMEf0002H04r2	-	-	3e+0	At5g13250	unknown protein	S.X.	H.G.	Please select
0.10	8.4	Contig11253_at	Contig11253	-	-	1e+0	At4g34290	SWIB complex BAF60b domain-containing protein	S.X.	H.G.	Please select
0.08	6.5	Contig17834_at	Contig17834	-	-	1e+0	At1g36980	unknown protein	S.X.	H.G.	Please select
0.05	4.1	Contig2776_at	Contig2776	-	-	5e-20	At3g22890	APS1 (ATP SULFURYLASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.4	99.6	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
15.4	99.6	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
14.9	99.5	GSM160464	drought control rep1	GSE6990	Barley drought stress
13.8	99.5	GSM71147	OWB-D unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
12.8	99.4	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
10.8	99.2	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
10.0	99.1	GSM68903	27 h control replicate3	GSE3097	Barley1 salinity stress study
9.2	99.0	GSM68902	27 h control replicate 2	GSE3097	Barley1 salinity stress study
8.6	98.8	GSM261026	ABA-Early-rep3	GSE10328	ABA experiment
8.3	98.8	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	2e-13	75	Contig19958_at	Contig19958	-	-	4e+0	At3g28990	unknown protein	C.G.	S.X.	Please select
0.08	2e-12	71	Contig12936_at	Contig12936	-	-	8e-3	At1g71691	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.06	9e-9	59	HU01E06w_at	HU01E06w	-	-	5e+0	At3g24450	copper-binding family protein	C.G.	S.X.	Please select
0.05	4e-8	57	Contig3998_at	Contig3998	-	-	3e-3	At5g33370	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.03	1e-4	46	Contig20059_at	Contig20059	-	-	3e-5	At2g42990	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.04	9e-3	40	Contig16208_at	Contig16208	-	-	5e+0	At5g01650	macrophage migration inhibitory factor family protein / MIF family protein	C.G.	S.X.	Please select
0.03	1e-1	36	Contig3023_s_at	Contig3023	-	-	2e-1	At3g49850	TRB3 (TELOMERE REPEAT BINDING FACTOR 3)	C.G.	S.X.	Please select
0.02	1e-1	36	Contig3922_at	Contig3922	-	-	2e-45	At5g16070	chaperonin, putative	C.G.	S.X.	Please select
0.03	1e-1	36	Contig3025_at	Contig3025	-	-	2e-1	At2g30310	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At4g32590	829394	ferredoxin-related	F:electron carrier activity, iron-sulfur cluster binding;P:unknown;C:chloroplast;OBPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e+0	32	Glycine max	PsAffx.CL218Contig1_s_at	PsAffx.CL218Contig1	-	-	1e-3	At4g10480	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	C.G.	S.X.	Please select
0.27	3e-27	123	Oryza sativa	Os01g0748500	9629.m05311	-	Lipolytic enzyme, G-D-S-L family protein	9e-3	At1g33811	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.211537.1.S1_at	pmrna22609	hypothetical protein	-	8e-1	At4g02380	SAG21 (SENESCENCE-ASSOCIATED GENE 21)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.28	6e-21	101	Triticum aestivum	Ta.18223.3.S1_x_at	CA705899	-	-	1e+1	At5g50460	protein transport protein SEC61 gamma subunit, putative	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1608647_at	CB007795	hypothetical protein LOC100267012	-	4e+0	At1g70660	MMZ2 (MMS ZWEI HOMOLOGE 2)	C.G.	S.X.	Please select
0.16	2e-31	135	Zea mays	Zm.8215.1.A1_at	CO532014	anther-specific proline-rich protein APG	-	8e-4	At4g30140	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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