Gene omics information

Query gene ID	Contig25138_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	72.0	Contig25138_at	Contig25138	-	-	3e+0	At1g19740	ATP-dependent protease La (LON) domain-containing protein	S.X.	H.G.	Please select
0.91	98.1	Contig25106_at	Contig25106	-	-	4e+0	At5g64990	AtRABH1a (Arabidopsis Rab GTPase homolog H1a)	S.X.	H.G.	Please select
0.67	84.7	Contig18315_at	Contig18315	-	-	3e-8	At2g18770	signal recognition particle binding	S.X.	H.G.	Please select
0.63	80.3	Contig19129_at	Contig19129	-	-	2e+0	At1g62250	unknown protein	S.X.	H.G.	Please select
0.60	77.3	Contig23295_at	Contig23295	-	-	5e+0	At3g10720	pectinesterase, putative	S.X.	H.G.	Please select
0.50	66.9	Contig20268_at	Contig20268	-	-	4e-1	At5g12140	ATCYS1 (A. thaliana cystatin-1)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.7	99.0	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.2	98.7	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
6.4	98.1	GSM238424	Endosperm 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.2	98.0	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.6	97.7	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
5.4	97.5	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
4.9	97.1	GSM372948	genotype: Mla6 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
4.8	97.0	GSM160464	drought control rep1	GSE6990	Barley drought stress
4.7	96.9	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
4.5	96.7	GSM160823	19% SWC rep1	GSE6990	Barley drought stress

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	Contig2505_at	Contig2505	-	-	9e-5	At2g36930	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Contig11159_at	Contig11159	-	-	8e-1	At4g24980	-	C.G.	S.X.	Please select
0.01	2e+0	32	Contig8435_at	Contig8435	-	-	1e+0	At4g31580	SRZ-22	C.G.	S.X.	Please select
0.02	2e+0	32	Contig15873_at	Contig15873	-	-	3e+0	At3g43490	zinc knuckle (CCHC-type) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig5684_at	Contig5684	-	-	2e+0	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	C.G.	S.X.	Please select
0.01	2e+0	32	Contig11716_at	Contig11716	-	-	6e-14	At2g25480	-	C.G.	S.X.	Please select
0.02	2e+0	32	Contig8957_at	Contig8957	-	-	1e-41	At1g09150	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig1228_s_at	Contig1228	-	-	4e-27	At4g00430	PIP1	C.G.	S.X.	Please select
0.04	6e+0	30	HVSMEk0009L02r2_s_at	HVSMEk0009L02r2	-	-	2e+0	At1g63855	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At1g19740	838563	ATP-dependent protease La (LON) domain-containing protein	F:ATP-dependent peptidase activity;P:ATP-dependent proteolysis;C:chloroplast;OBMPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e+0	32	Glycine max	HgAffx.17070.1.S1_at	CB279286	-	-	1e+1	At5g35525	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	OsAffx.9821.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	Ptp.6818.1.S1_s_at	DN499964	hypothetical protein	-	5e-1	At1g68320	MYB62 (myb domain protein 62)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	TaAffx.7259.1.S1_at	CA663736	-	-	2e-1	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1621636_s_at	CF202035.1	hypothetical protein LOC100265903	-	8e-4	At2g47730	ATGSTF8 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 8)	C.G.	S.X.	Please select
0.03	6e+0	30	Zea mays	Zm.9621.1.A1_at	BM333959	ethylene-responsive transcription factor 3	-	4e+0	At1g69490	NAP (NAC-like, activated by AP3/PI)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage