Gene omics information

Query gene ID	Contig25064_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig25064_at	Contig25064	-	-	1e+0	At1g54215	proline-rich family protein	S.X.	H.G.	Please select
0.83	94.0	Contig13888_at	Contig13888	-	-	3e-2	At5g19940	plastid-lipid associated protein PAP-related / fibrillin-related	S.X.	H.G.	Please select
0.80	92.5	Contig3096_s_at	Contig3096	-	-	3e+0	At3g17170	RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3)	S.X.	H.G.	Please select
0.73	88.7	Contig24207_at	Contig24207	-	-	4e-4	At5g57850	aminotransferase class IV family protein	S.X.	H.G.	Please select
0.53	69.7	EBan01_SQ002_F13_at	EBan01_SQ002_F13	-	-	3e-1	At3g52230	unknown protein	S.X.	H.G.	Please select
0.47	62.2	EBan01_SQ005_B22_s_at	EBan01_SQ005_B22	-	-	5e+0	At1g30630	coatomer protein epsilon subunit family protein / COPE family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.9	99.3	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.3	99.0	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
8.2	98.7	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.9	98.7	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
7.7	98.6	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.4	98.5	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.2	98.5	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
7.0	98.4	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
6.9	98.3	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
6.3	98.1	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-3	42	Contig5492_at	Contig5492	-	-	1e-7	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	C.G.	S.X.	Please select
0.02	1e-2	40	Contig9163_at	Contig9163	-	-	2e-6	At1g03680	ATHM1	C.G.	S.X.	Please select
0.03	4e-2	38	Contig20709_at	Contig20709	-	-	1e-1	At5g19090	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.02	4e-2	38	Contig11085_at	Contig11085	-	-	2e-6	At2g18290	anaphase-promoting complex, subunit 10 family / APC10 family	C.G.	S.X.	Please select
0.02	4e-2	38	Contig10477_at	Contig10477	-	-	7e-1	At5g13020	emsy N terminus domain-containing protein / ENT domain-containing protein	C.G.	S.X.	Please select
0.02	4e-2	38	Contig8532_at	Contig8532	-	-	1e-5	At5g16120	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Contig8333_at	Contig8333	-	-	4e-2	At3g56510	TBP-binding protein, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Contig16273_at	Contig16273	-	-	3e-6	At4g02600	MLO1	C.G.	S.X.	Please select
0.04	2e-1	36	HA30K22r_s_at	HA30K22r	-	-	4e-3	At1g51650	ATP synthase epsilon chain, mitochondrial	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At1g54215	841862	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBOFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	PsAffx.CL2565Contig1_at	PsAffx.CL2565Contig1	-	-	4e+0	At1g08480	unknown protein	C.G.	S.X.	Please select
0.15	4e-36	153	Oryza sativa	Os09g0507400	AK067860.1	-	Hypothetical protein	1e+0	At3g60890	ZPR2 (LITTLE ZIPPER 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.149393.1.S1_at	CN524402	hypothetical protein	-	5e-22	At4g29960	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.59	8e-144	510	Triticum aestivum	Ta.8908.1.S1_at	CA652223	-	-	1e+0	At3g05930	GLP8 (GERMIN-LIKE PROTEIN 8)	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1609022_at	CF371738	hypothetical protein LOC100250008	-	1e+0	At4g13690	unknown protein	C.G.	S.X.	Please select
0.03	6e-1	34	Zea mays	Zm.2176.1.S1_at	AY111425.1	-	-	4e+0	At1g54215	proline-rich family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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