Gene omics information

Query gene ID	Contig25019_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.7	Contig25019_at	Contig25019	-	-	9e-2	At3g46910	ubiquitin protein ligase binding	S.X.	H.G.	Please select
0.77	90.8	rbaal24b05_s_at	rbaal24b05	-	-	1e+0	At1g09630	ATRAB11C (ARABIDOPSIS RAB GTPASE 11C)	S.X.	H.G.	Please select
0.73	88.7	Contig1936_x_at	Contig1936	-	-	3e-42	At4g17390	60S ribosomal protein L15 (RPL15B)	S.X.	H.G.	Please select
0.50	66.9	Contig25746_at	Contig25746	-	-	4e-1	At3g59620	-	S.X.	H.G.	Please select
0.20	21.1	U08169_at	U08169	-	-	9e+0	At4g30070	LCR59 (Low-molecular-weight cysteine-rich 59)	S.X.	H.G.	Please select
0.07	5.8	Contig2379_s_at	Contig2379	-	-	2e-8	At2g04700	ferredoxin thioredoxin reductase catalytic beta chain family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.7	98.6	GSM372998	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.5	98.6	GSM373001	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.2	98.5	GSM398264	HS41-1_1d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.7	98.3	GSM372979	genotype: 11542 - pathogen isolates: 5874 - time: 8 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.6	98.2	GSM372999	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.2	98.0	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.1	98.0	GSM372978	genotype: 11542 - pathogen isolates: 5874 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.8	97.8	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
5.8	97.8	GSM372994	genotype: 11542 - pathogen isolates: K1 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
5.6	97.7	GSM373004	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	rbaal14c13_at	rbaal14c13	-	-	3e+0	At1g67870	glycine-rich protein	C.G.	S.X.	Please select
0.01	3e+0	34	Contig7198_at	Contig7198	-	-	5e-9	At5g11560	catalytic	C.G.	S.X.	Please select
0.01	3e+0	34	Contig18503_at	Contig18503	-	-	1e-1	At4g01995	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	34	Contig6761_at	Contig6761	-	-	6e-11	At3g43790	ZIFL2 (ZINC INDUCED FACILITATOR-like 2)	C.G.	S.X.	Please select
0.01	3e+0	34	Contig13555_at	Contig13555	-	-	4e-1	Atmg01290	-	C.G.	S.X.	Please select
0.01	3e+0	34	Contig12779_at	Contig12779	-	-	2e-2	At4g35470	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.01	3e+0	34	Contig3349_at	Contig3349	-	-	2e+0	At3g07880	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please select
0.01	3e+0	34	Contig10047_at	Contig10047	-	-	7e-1	At1g54060	ASIL1 (ARABIDOPSIS 6B-INTERACTING PROTEIN 1-LIKE 1)	C.G.	S.X.	Please select
0.01	3e+0	34	Contig9593_s_at	Contig9593	-	-	1e-7	At5g48150	PAT1 (phytochrome a signal transduction 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	9e-2	40	Arabidopsis thaliana	At3g46910	823844	ubiquitin protein ligase binding	F:ubiquitin protein ligase binding;P:ubiquitin-dependent protein catabolic process;C:cullin-RING ubiquitin ligase complex;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	5e-1	38	Glycine max	GmaAffx.21936.1.A1_at	BG237767	-	-	1e+0	At4g13575	unknown protein	C.G.	S.X.	Please select
0.23	3e-34	149	Oryza sativa	Os10g0120300	AK073088.1	-	Leucine-rich repeat, plant specific containingprotein	8e-2	At3g46330	MEE39 (maternal effect embryo arrest 39)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	8e-6	54	Populus trichocarpa	PtpAffx.225075.1.S1_at	pmrna44161	hypothetical protein	-	4e-4	At5g25930	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	1e-59	232	Triticum aestivum	Ta.25518.1.S1_at	CD490799	-	-	2e+0	At4g22370	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Vitis vinifera	1618917_at	CB970710	-	-	1e-4	At4g16370	ATOPT3 (OLIGOPEPTIDE TRANSPORTER)	C.G.	S.X.	Please select
0.01	2e+0	34	Zea mays	Zm.9593.1.A1_at	BM332041	-	-	1e+0	At4g05170	DNA binding / transcription factor	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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