Gene omics information

Query gene ID	Contig24884_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.98	100.0	Contig24884_at	Contig24884	-	-	1e-1	At5g10140	FLC (FLOWERING LOCUS C)	S.X.	H.G.	Please select
0.98	100.0	Contig11232_at	Contig11232	-	-	1e-4	At3g26790	FUS3 (FUSCA 3)	S.X.	H.G.	Please select
0.98	100.0	EBma08_SQ002_F06_at	EBma08_SQ002_F06	-	-	9e-1	At3g43170	unknown protein	S.X.	H.G.	Please select
0.98	100.0	HD04G09u_at	HD04G09u	-	-	1e+0	At2g46690	auxin-responsive family protein	S.X.	H.G.	Please select
0.95	99.2	HB04I10r_at	HB04I10r	-	-	5e+0	At5g56230	PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2)	S.X.	H.G.	Please select
0.95	99.2	HF14A04r_at	HF14A04r	-	-	2e+0	At5g22240	OFP10	S.X.	H.G.	Please select
0.95	99.2	HD08L09r_at	HD08L09r	-	-	4e+0	At2g40085	unknown protein	S.X.	H.G.	Please select
0.95	99.2	HM11M18r_at	HM11M18r	-	-	9e-1	At2g27160	unknown protein	S.X.	H.G.	Please select
0.95	99.2	HB14P07r_at	HB14P07r	-	-	6e+0	At5g17810	WOX12 (WUSCHEL related homeobox 12)	S.X.	H.G.	Please select
0.95	99.2	HB04I10r_x_at	HB04I10r	-	-	5e+0	At5g56230	PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
234.9	100.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
156.6	100.0	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.2	98.7	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
1.9	88.2	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
0.6	65.6	GSM440978	Stressed seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
0.1	39.4	GSM440979	Stressed seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
0.0	29.9	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
0.0	29.9	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
0.0	29.9	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
0.0	29.9	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	7e-8	57	Contig12483_at	Contig12483	-	-	2e-3	At3g57390	AGL18	C.G.	S.X.	Please select
0.08	4e-6	52	Contig16350_at	Contig16350	-	-	9e-3	At3g57390	AGL18	C.G.	S.X.	Please select
0.05	2e-5	50	Contig10383_at	Contig10383	-	-	6e-4	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.07	7e-5	48	Contig2200_s_at	Contig2200	-	-	2e-3	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select
0.04	3e-4	46	Contig14348_at	Contig14348	-	-	3e-3	At1g71692	AGL12 (AGAMOUS-LIKE 12)	C.G.	S.X.	Please select
0.03	3e-4	46	Contig3831_at	Contig3831	-	-	3e-15	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.06	1e-3	44	Contig2198_at	Contig2198	-	-	3e-6	At1g24260	SEP3 (SEPALLATA3)	C.G.	S.X.	Please select
0.07	7e-2	38	Contig7416_at	Contig7416	-	-	2e-4	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.01	7e-2	38	Contig4208_at	Contig4208	-	-	6e-6	At2g36580	pyruvate kinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	38	Arabidopsis thaliana	At5g10140	830878	FLC (FLOWERING LOCUS C)	MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3’ to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	38	Glycine max	PsAffx.C78000026_at	PsAffx.C78000026	-	-	1e+0	At2g18680	unknown protein	C.G.	S.X.	Please select
0.47	3e-115	416	Oryza sativa	Os04g0614100	AY177698.1	-	Transcription factor, MADS-box domain containingprotein	4e+0	At5g23260	TT16 (TRANSPARENT TESTA16)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e-2	42	Populus trichocarpa	PtpAffx.201225.1.S1_s_at	pmrna2438	hypothetical protein	-	6e-24	At2g14210	AGL44 (AGAMOUS-LIKE 44)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	7e-13	75	Triticum aestivum	Ta.27569.1.S1_at	CD888059	MADS-box transcription factor TaAGL35	-	8e-2	At5g51870	AGL71 (AGAMOUS-LIKE 71)	C.G.	S.X.	Please select
0.05	3e-3	42	Vitis vinifera	1609046_at	CB971729	hypothetical protein LOC100256085	-	1e-13	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select
0.15	3e-19	95	Zea mays	Zm.9560.1.A1_at	BM382073	m17 protein	-	3e-2	At1g77080	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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