Gene omics information

Query gene ID Contig24884_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.98100.0Contig24884_atContig24884--1e-1At5g10140FLC (FLOWERING LOCUS C)S.X.H.G.
0.98100.0Contig11232_atContig11232--1e-4At3g26790FUS3 (FUSCA 3)S.X.H.G.
0.98100.0EBma08_SQ002_F06_atEBma08_SQ002_F06--9e-1At3g43170unknown proteinS.X.H.G.
0.98100.0HD04G09u_atHD04G09u--1e+0At2g46690auxin-responsive family proteinS.X.H.G.
0.9599.2HB04I10r_atHB04I10r--5e+0At5g56230PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2)S.X.H.G.
0.9599.2HF14A04r_atHF14A04r--2e+0At5g22240OFP10S.X.H.G.
0.9599.2HD08L09r_atHD08L09r--4e+0At2g40085unknown proteinS.X.H.G.
0.9599.2HM11M18r_atHM11M18r--9e-1At2g27160unknown proteinS.X.H.G.
0.9599.2HB14P07r_atHB14P07r--6e+0At5g17810WOX12 (WUSCHEL related homeobox 12)S.X.H.G.
0.9599.2HB04I10r_x_atHB04I10r--5e+0At5g56230PRA1.G2 (PRENYLATED RAB ACCEPTOR 1.G2)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
234.9100.0GSM238412Endosperm 4DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
156.6100.0GSM238413Endosperm 4DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
8.298.7GSM238415Endosperm 8DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
1.988.2GSM238414Endosperm 8DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
0.665.6GSM440978Stressed seed_Rep1GSE17669Gene expression in the barley spike during drought stress
0.139.4GSM440979Stressed seed_Rep2GSE17669Gene expression in the barley spike during drought stress
0.029.9GSM419982Seed_Rep2GSE16754Comparative transcriptional profiling of organs of the barley spike
0.029.9GSM440976Control seed_Rep2GSE17669Gene expression in the barley spike during drought stress
0.029.9GSM419983Seed_Rep3GSE16754Comparative transcriptional profiling of organs of the barley spike
0.029.9GSM440977Control seed_Rep3GSE17669Gene expression in the barley spike during drought stress
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.087e-857Contig12483_atContig12483--2e-3At3g57390AGL18C.G.S.X.
0.084e-652Contig16350_atContig16350--9e-3At3g57390AGL18C.G.S.X.
0.052e-550Contig10383_atContig10383--6e-4At2g22540SVP (SHORT VEGETATIVE PHASE)C.G.S.X.
0.077e-548Contig2200_s_atContig2200--2e-3At2g45650AGL6 (AGAMOUS-LIKE 6)C.G.S.X.
0.043e-446Contig14348_atContig14348--3e-3At1g71692AGL12 (AGAMOUS-LIKE 12)C.G.S.X.
0.033e-446Contig3831_atContig3831--3e-15At4g18960AG (AGAMOUS)C.G.S.X.
0.061e-344Contig2198_atContig2198--3e-6At1g24260SEP3 (SEPALLATA3)C.G.S.X.
0.077e-238Contig7416_atContig7416--2e-4At5g60910AGL8 (agamous-like 8)C.G.S.X.
0.017e-238Contig4208_atContig4208--6e-6At2g36580pyruvate kinase, putativeC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.031e-138Arabidopsis thalianaAt5g10140830878FLC (FLOWERING LOCUS C)MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3 to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.---C.G.S.X.
0.032e-138Glycine maxPsAffx.C78000026_atPsAffx.C78000026--1e+0At2g18680unknown proteinC.G.S.X.
0.473e-115416Oryza sativaOs04g0614100AY177698.1-Transcription factor, MADS-box domain containingprotein4e+0At5g23260TT16 (TRANSPARENT TESTA16)C.G.S.X.
0.051e-242Populus trichocarpaPtpAffx.201225.1.S1_s_atpmrna2438hypothetical protein-6e-24At2g14210AGL44 (AGAMOUS-LIKE 44)C.G.S.X.
0.197e-1375Triticum aestivumTa.27569.1.S1_atCD888059MADS-box transcription factor TaAGL35-8e-2At5g51870AGL71 (AGAMOUS-LIKE 71)C.G.S.X.
0.053e-342Vitis vinifera1609046_atCB971729hypothetical protein LOC100256085-1e-13At2g45650AGL6 (AGAMOUS-LIKE 6)C.G.S.X.
0.153e-1995Zea maysZm.9560.1.A1_atBM382073m17 protein-3e-2At1g77080-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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