CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig2481_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.76 89.8 Contig2481_s_at Contig2481 - - 8e-6 At1g43160 RAP2.6 (related to AP2 6) S.X. H.G.
0.38 49.5 rbaal20n01_s_at rbaal20n01 - - 4e-1 At3g46160 protein kinase-related S.X. H.G.
0.29 35.5 Contig20072_at Contig20072 - - 6e+0 At4g26288 - S.X. H.G.
0.23 26.1 Contig656_at Contig656 - - 3e-1 At4g27230 HTA2 (histone H2A) S.X. H.G.
0.20 21.1 Contig13864_at Contig13864 - - 9e-2 At3g60590 unknown protein S.X. H.G.
0.20 21.1 Contig4734_s_at Contig4734 - - 1e-25 At1g10950 endomembrane protein 70, putative S.X. H.G.
0.15 14.1 Contig8038_s_at Contig8038 - - 7e-82 At3g24190 ABC1 family protein S.X. H.G.
0.14 12.9 Contig17047_at Contig17047 - - 2e+0 At3g13440 methyltransferase/ nucleic acid binding S.X. H.G.
0.13 11.6 Contig5497_s_at Contig5497 - - 1e-3 At3g44190 pyridine nucleotide-disulphide oxidoreductase family protein S.X. H.G.
0.12 10.4 Contig4535_at Contig4535 - - 2e-42 At4g31490 coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
37.2 99.9 GSM238420 Endosperm 0 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
36.0 99.9 GSM238424 Endosperm 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
34.6 99.9 GSM238425 Endosperm 48 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
27.7 99.8 GSM238423 Endosperm 24 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
27.4 99.8 GSM238427 Endosperm 72 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
24.8 99.8 GSM238422 Endosperm 24 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
24.5 99.8 GSM238426 Endosperm 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
22.8 99.8 GSM238421 Endosperm 0 h; Seed germination Rep 2 GSE9365 Expression data from barley maturing and germinating grains
15.7 99.6 GSM215727 Control (DMSO) treatment rep1 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
15.6 99.6 GSM282041 Control_dryseed_Morex_rep2 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 1e-30 133 Contig6526_at Contig6526 - - 7e-1 At5g11550 binding C.G. S.X.
0.11 8e-26 117 Contig18750_at Contig18750 - - 2e+0 At2g33710 AP2 domain-containing transcription factor family protein C.G. S.X.
0.10 5e-24 111 Contig2471_at Contig2471 - - 1e-1 At5g44210 ERF9 (ERF DOMAIN PROTEIN 9) C.G. S.X.
0.09 1e-12 73 Contig10472_at Contig10472 - - 9e-3 At2g44840 ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13) C.G. S.X.
0.08 2e-11 69 Contig4317_at Contig4317 - - 2e-1 At1g36060 AP2 domain-containing transcription factor, putative C.G. S.X.
0.04 2e-11 69 Contig2479_at Contig2479 - - 9e-3 At1g53170 ERF8 C.G. S.X.
0.05 3e-7 56 Contig8984_at Contig8984 - - 2e+0 At2g05520 GRP-3 (GLYCINE-RICH PROTEIN 3) C.G. S.X.
0.02 2e-5 50 Contig7483_at Contig7483 - - 8e-10 At1g68840 RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE) C.G. S.X.
0.04 2e-5 50 Contig17873_at Contig17873 - - 4e-1 At4g17490 ATERF6 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 6) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 8e-6 52 Arabidopsis thaliana At1g43160 840915 RAP2.6 (related to AP2 6) encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family (RAP2.6). The protein contains one AP2 domain. There are 7 members in this subfamily. - - - C.G. S.X.
0.15 5e-14 79 Glycine max GmaAffx.93436.1.A1_s_at CF809161 - - 4e-13 At2g47520 AP2 domain-containing transcription factor, putative C.G. S.X.
0.23 5e-89 329 Oryza sativa Os05g0437100 9633.m03366 - Pathogenesis-related transcriptional factor andERF domain containing protein 2e-6 At1g43160 RAP2.6 (related to AP2 6) C.G. S.X.
0.04 4e-2 40 Populus trichocarpa Ptp.6257.1.S1_at CV234411 hypothetical protein - 9e-12 At1g53230 TCP3 C.G. S.X.
0.20 2e-71 270 Triticum aestivum TaAffx.16192.1.S1_at BQ169008 - - 1e-8 At1g43160 RAP2.6 (related to AP2 6) C.G. S.X.
0.13 2e-6 52 Vitis vinifera 1609683_at CF604955 hypothetical protein LOC100249982 - 2e-11 At2g47520 AP2 domain-containing transcription factor, putative C.G. S.X.
0.10 3e-22 105 Zea mays Zm.18520.1.A1_at CF632042 - - 8e-3 At5g44210 ERF9 (ERF DOMAIN PROTEIN 9) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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