Gene omics information

Query gene ID	Contig2474_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	78.7	Contig2474_at	Contig2474	-	-	2e-1	At1g80240	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig12021_at	Contig12021	-	-	6e+0	At5g18970	AWPM-19-like membrane family protein	S.X.	H.G.	Please select
0.40	53.1	Contig12276_at	Contig12276	-	-	4e-2	At4g32960	unknown protein	S.X.	H.G.	Please select
0.33	42.6	HS17I17u_s_at	HS17I17u	-	-	1e+1	At5g23100	unknown protein	S.X.	H.G.	Please select
0.27	32.1	S0000200012H06F1_at	S0000200012H06F1	-	-	4e-2	At4g15620	integral membrane family protein	S.X.	H.G.	Please select
0.10	8.4	HVSMEb0012H18r2_at	HVSMEb0012H18r2	-	-	7e-2	At5g27541		S.X.	H.G.	Please select
0.02	1.8	Contig8273_at	Contig8273	-	-	2e+0	At5g03170	FLA11	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
47.7	99.9	GSM238435	Embryo 24 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
25.5	99.8	GSM282034	Malting_steeped_Morex_rep1	GSE11200	Expression data from malting barley seeds
24.3	99.8	GSM238434	Embryo 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.5	99.2	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
9.0	98.9	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress
7.7	98.6	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
7.3	98.5	GSM238436	Embryo 48 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM261044	before 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
6.4	98.1	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
5.9	97.9	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	0	759	Contig2475_at	Contig2475	-	-	7e-2	At4g11870	unknown protein	C.G.	S.X.	Please select
0.36	3e-165	581	HS17I17u_s_at	HS17I17u	-	-	1e+1	At5g23100	unknown protein	C.G.	S.X.	Please select
0.22	5e-22	105	Contig10884_at	Contig10884	-	-	3e-3	At5g17510	unknown protein	C.G.	S.X.	Please select
0.06	4e-10	65	EBem05_SQ002_F23_at	EBem05_SQ002_F23	-	-	6e-2	At4g25190	unknown protein	C.G.	S.X.	Please select
0.06	4e-4	46	Contig23663_at	Contig23663	-	-	5e+0	At4g16240	unknown protein	C.G.	S.X.	Please select
0.02	2e-2	40	Contig18913_at	Contig18913	-	-	6e-9	At2g44910	ATHB4 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4)	C.G.	S.X.	Please select
0.02	2e-2	40	Contig6180_s_at	Contig6180	-	-	2e-19	At1g25520	unknown protein	C.G.	S.X.	Please select
0.02	2e-2	40	Contig5845_at	Contig5845	-	-	3e-3	At2g34510	-	C.G.	S.X.	Please select
0.01	9e-2	38	Contig1390_3_s_at	Contig1390_3	actin	-	0	At5g09810	ACT7 (ACTIN 7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	38	Arabidopsis thaliana	At1g80240	844364	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-14	81	Glycine max	Gma.12342.3.S1_at	BQ081225	-	-	1e-5	At5g25460	unknown protein	C.G.	S.X.	Please select
0.56	0	845	Oryza sativa	Os01g0611000	AK072500.1	-	Protein of unknown function DUF642 family protein	3e+0	At1g10790	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	34	Populus trichocarpa	PtpAffx.736.1.S1_at	CV236187	hypothetical protein	-	2e-4	At5g11420	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.77	0	1683	Triticum aestivum	Ta.9151.1.S1_x_at	CK215909	-	-	1e+1	At1g71780	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1619831_a_at	BQ794924	hypothetical protein LOC100252479	-	6e-10	At4g32460	-	C.G.	S.X.	Please select
0.21	5e-68	258	Zea mays	Zm.7364.1.A1_at	BM078096	-	-	2e+0	At5g25750	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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