Gene omics information

Query gene ID	Contig24614_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.90	95.7	Contig24614_at	Contig24614	-	-	6e-2	At1g47970	unknown protein	S.X.	H.G.	Please select
0.56	74.3	Contig235_at	Contig235	-	-	7e-35	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	S.X.	H.G.	Please select
0.44	58.9	Contig17539_at	Contig17539	-	-	5e-41	At3g02460	plant adhesion molecule, putative	S.X.	H.G.	Please select
0.41	53.9	Contig12308_at	Contig12308	-	-	1e-5	At3g23530	cyclopropane fatty acid synthase, putative / CPA-FA synthase, putative	S.X.	H.G.	Please select
0.40	53.1	Contig6884_s_at	Contig6884	-	-	9e-5	At4g34100	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.38	49.5	Contig11632_at	Contig11632	-	-	4e-2	At2g37080	myosin heavy chain-related	S.X.	H.G.	Please select
0.37	47.9	Contig16518_at	Contig16518	-	-	7e+0	Atmg00070	-	S.X.	H.G.	Please select
0.37	47.9	HVSMEg0010L05r2_at	HVSMEg0010L05r2	-	-	2e+0	At2g45610	hydrolase	S.X.	H.G.	Please select
0.36	47.1	Contig16255_s_at	Contig16255	-	-	2e-11	At3g46590	TRFL1 (TRF-LIKE 1)	S.X.	H.G.	Please select
0.34	43.6	Contig10225_s_at	Contig10225	-	-	4e+0	At5g09490	40S ribosomal protein S15 (RPS15B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.1	99.8	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
21.5	99.8	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
17.8	99.7	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
15.6	99.6	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
12.2	99.4	GSM398280	Moroc9-75_3d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
11.4	99.3	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
10.7	99.2	GSM398255	Martin_3d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
8.4	98.8	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.0	98.4	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	34	Contig8809_at	Contig8809	-	-	5e-1	At5g02020	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	34	Contig8724_at	Contig8724	-	-	7e-2	At1g02305	cathepsin B-like cysteine protease, putative	C.G.	S.X.	Please select
0.02	4e-1	34	Contig1907_s_at	Contig1907	-	-	6e-4	At4g12780	heat shock protein binding	C.G.	S.X.	Please select
0.03	2e+0	32	Contig26419_at	Contig26419	-	-	4e+0	At2g02515	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig12579_at	Contig12579	-	-	2e-7	At1g14270	CAAX amino terminal protease family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig11235_at	Contig11235	-	-	3e-12	At3g01790	ribosomal protein L13 family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig9520_at	Contig9520	-	-	4e-4	At5g46160	ribosomal protein L14 family protein / huellenlos paralog (HLP)	C.G.	S.X.	Please select
0.04	2e+0	32	Contig7760_s_at	Contig7760	-	-	7e-1	At3g30350	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Contig7760_at	Contig7760	-	-	7e-1	At3g30350	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	6e-2	38	Arabidopsis thaliana	At1g47970	841215	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	PsAffx.CL2386Contig1_at	PsAffx.CL2386Contig1	-	-	5e-2	At5g28490	LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)	C.G.	S.X.	Please select
0.02	2e+0	34	Oryza sativa	OsAffx.26621.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Populus trichocarpa	Ptp.6617.1.S1_s_at	CK094139	hypothetical protein	-	1e-42	At1g16720	HCF173 (high chlorophyll fluorescence phenotype 173)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	9e-1	34	Triticum aestivum	TaAffx.6187.1.S1_at	CA690325	-	-	8e+0	At5g49860	jacalin lectin family protein	C.G.	S.X.	Please select
0.04	7e-2	36	Vitis vinifera	1607052_at	CB343395	-	-	4e+0	At5g18404	unknown protein	C.G.	S.X.	Please select
0.04	4e-1	34	Zea mays	Zm.3969.1.A1_at	AI795587	-	-	2e+1	At5g10070	RNase L inhibitor protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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