Gene omics information

Query gene ID	Contig2454_at
Gene name	phospholipid hydroperoxide glutathione peroxidase-like protein
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.88	95.2	Contig2454_at	Contig2454	phospholipid hydroperoxide glutathione peroxidase-like protein	-	5e-72	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	S.X.	H.G.	Please select
0.49	63.7	Contig12410_at	Contig12410	-	-	4e-1	At4g01580	transcriptional factor B3 family protein	S.X.	H.G.	Please select
0.48	63.2	Contig13434_at	Contig13434	-	-	6e-10	At4g38520	protein phosphatase 2C family protein / PP2C family protein	S.X.	H.G.	Please select
0.41	53.9	Contig4085_s_at	Contig4085	-	-	4e-4	At2g37120	DNA-binding S1FA family protein	S.X.	H.G.	Please select
0.40	53.1	Contig14230_at	Contig14230	-	-	5e-1	At5g01430	Got1-like family protein	S.X.	H.G.	Please select
0.39	50.5	Contig13801_s_at	Contig13801	-	-	3e+0	At2g25409	unknown protein	S.X.	H.G.	Please select
0.38	49.5	Contig16599_at	Contig16599	-	-	3e-1	At4g29710	phosphodiesterase/nucleotide pyrophosphatase-related	S.X.	H.G.	Please select
0.38	49.5	Contig8262_at	Contig8262	-	-	2e-1	At3g15800	glycosyl hydrolase family 17 protein	S.X.	H.G.	Please select
0.38	49.5	Contig14263_at	Contig14263	-	-	2e+0	At5g22650	HD2B (HISTONE DEACETYLASE 2B)	S.X.	H.G.	Please select
0.38	49.5	Contig12720_at	Contig12720	-	-	7e+0	At5g38180	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.0	98.7	GSM419978	Awn_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
8.0	98.7	GSM440969	Control awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.3	97.4	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
4.7	96.9	GSM261055	Bonus Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.5	96.7	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
4.3	96.4	GSM440972	Stressed awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
4.3	96.4	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.3	96.4	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.8	95.7	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.6	95.3	GSM419972	Lemma_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.52	1e-129	462	bah28h09_at	bah28h09	-	-	3e-19	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please select
0.43	2e-109	395	Contig2453_at	Contig2453	-	-	9e-24	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please select
0.18	1e-30	133	HV04J01r_s_at	HV04J01r	-	-	2e-7	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please select
0.18	1e-30	133	HV04J01r_at	HV04J01r	-	-	2e-7	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please select
0.03	6e-5	48	Contig7573_at	Contig7573	-	-	9e-12	At1g21065	unknown protein	C.G.	S.X.	Please select
0.01	3e-4	46	Contig6935_at	Contig6935	-	-	2e-5	At5g27540	MIRO1 (Miro-related GTP-ase 1)	C.G.	S.X.	Please select
0.02	1e-3	44	Contig18263_at	Contig18263	-	-	3e-3	At3g06200	guanylate kinase, putative	C.G.	S.X.	Please select
0.03	1e-3	44	Contig10472_at	Contig10472	-	-	9e-3	At2g44840	ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)	C.G.	S.X.	Please select
0.05	1e-3	44	Contig8367_at	Contig8367	-	-	6e-34	At2g25080	ATGPX1 (GLUTATHIONE PEROXIDASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	5e-72	272	Arabidopsis thaliana	At4g11600	826765	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	Encodes glutathione peroxidase.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.26	1e-39	165	Glycine max	GmaAffx.93342.1.S1_s_at	CF809067	-	-	9e-39	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please select
0.51	3e-167	589	Oryza sativa	Os02g0664000	AK058456.1	-	GPX12Hv, glutathione peroxidase-like protein	7e-34	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.33	6e-23	109	Populus trichocarpa	Ptp.7493.1.S1_s_at	CV266457	glutathione peroxidase	-	2e-34	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.68	0	884	Triticum aestivum	Ta.5358.1.S1_a_at	CK216705	-	-	1e-48	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please select
0.33	5e-66	250	Vitis vinifera	1609654_at	BM437093	hypothetical protein LOC100259774	-	6e-32	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please select
0.43	2e-94	345	Zea mays	Zm.6203.2.A1_a_at	CF637772	putative glutathione peroxidase	-	2e-40	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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