Gene omics information

Query gene ID	Contig24465_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.33	42.6	Contig24465_at	Contig24465	-	-	3e+0	At5g42700	transcriptional factor B3 family protein	S.X.	H.G.	Please select
0.60	77.3	HT09G06u_s_at	HT09G06u	-	-	4e+0	At3g27210	unknown protein	S.X.	H.G.	Please select
0.53	69.7	HS08K24u_at	HS08K24u	-	-	1e+0	At5g29000	myb family transcription factor	S.X.	H.G.	Please select
0.46	61.0	HS09I04u_at	HS09I04u	-	-	4e+0	At5g35920	CYP79A4P	S.X.	H.G.	Please select
0.40	53.1	Contig6584_at	Contig6584	-	-	8e-7	At1g79230	MST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1)	S.X.	H.G.	Please select
0.36	47.1	Contig6959_at	Contig6959	-	-	2e-6	At4g25680	unknown protein	S.X.	H.G.	Please select
0.28	35.5	HY05A23u_at	HY05A23u	-	-	3e+0	At2g32960	tyrosine specific protein phosphatase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.8	99.8	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
12.4	99.4	GSM282036	Malting_steeped_Morex_rep2	GSE11200	Expression data from malting barley seeds
10.6	99.2	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.9	99.1	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
7.8	98.6	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
7.6	98.6	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
7.0	98.4	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
6.9	98.3	GSM68902	27 h control replicate 2	GSE3097	Barley1 salinity stress study
6.8	98.3	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
6.8	98.3	GSM68899	8 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	34	Contig8467_x_at	Contig8467	-	-	6e-3	At2g05540	glycine-rich protein	C.G.	S.X.	Please select
0.03	4e-1	34	Contig8466_s_at	Contig8466	-	-	8e-2	At5g44570	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	34	Contig26412_at	Contig26412	-	-	5e+0	At5g26980	SYP41 (SYNTAXIN OF PLANTS 41)	C.G.	S.X.	Please select
0.03	4e-1	34	Contig8467_at	Contig8467	-	-	6e-3	At2g05540	glycine-rich protein	C.G.	S.X.	Please select
0.03	4e-1	34	Contig8466_at	Contig8466	-	-	8e-2	At5g44570	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Contig14721_at	Contig14721	-	-	5e+0	At4g15670	glutaredoxin family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig22612_at	Contig22612	-	-	4e-1	At5g02770	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig11718_at	Contig11718	-	-	2e-1	At1g28340	AtRLP4 (Receptor Like Protein 4)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig16812_at	Contig16812	-	-	3e+0	At4g23770	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At5g42700	834279	transcriptional factor B3 family protein	F:DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	HgAffx.869.1.S1_at	CK351821	-	-	8e-1	At5g64160	unknown protein	C.G.	S.X.	Please select
0.05	2e+0	34	Oryza sativa	OsAffx.5102.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	34	Populus trichocarpa	PtpAffx.208010.1.S1_at	pmrna15897	hypothetical protein	-	5e-10	At3g25855	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e+0	32	Triticum aestivum	Ta.8207.3.S1_at	BG905433	-	-	4e-1	At4g16160	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1611858_at	CA810806	-	-	1e-1	At1g63820	-	C.G.	S.X.	Please select
0.02	1e+0	32	Zea mays	Zm.7080.1.A1_at	BM080239	hypothetical protein LOC100192783	-	2e-13	At1g57660	60S ribosomal protein L21 (RPL21E)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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