Gene omics information

Query gene ID	Contig24327_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	66.9	Contig24327_at	Contig24327	-	-	2e+0	At2g32470	F-box family protein-related	S.X.	H.G.	Please select
0.73	88.7	HVSMEg0015A14r2_at	HVSMEg0015A14r2	-	-	1e+0	At5g03905	hesB-like domain-containing protein	S.X.	H.G.	Please select
0.67	84.7	Contig982_at	Contig982	-	-	2e-1	At5g20520	WAV2 (WAVY GROWTH 2)	S.X.	H.G.	Please select
0.61	78.7	Contig21303_at	Contig21303	-	-	2e+0	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	S.X.	H.G.	Please select
0.29	35.5	Contig14918_at	Contig14918	-	-	7e-3	At5g64960	CDKC2 (Cyclin dependent kinase group C 2)	S.X.	H.G.	Please select
0.29	35.5	HP01O07w_at	HP01O07w	-	-	3e+0	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.3	99.5	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
12.8	99.4	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
11.6	99.3	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
11.4	99.3	GSM372962	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.3	99.3	GSM372970	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.9	99.2	GSM160815	drought control rep3	GSE6990	Barley drought stress
9.7	99.0	GSM261037	Dicktoo-subzero-rep2	GSE10329	Low temperature stress in cv. Dicktoo
9.2	99.0	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
8.5	98.8	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress
8.2	98.7	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	34	Contig13387_at	Contig13387	-	-	4e-2	At2g35200	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	HF21J01r_at	HF21J01r	-	-	3e-1	At2g45060	-	C.G.	S.X.	Please select
0.01	8e-1	34	Contig6124_at	Contig6124	-	-	5e-2	At5g58490	cinnamoyl-CoA reductase family	C.G.	S.X.	Please select
0.03	3e+0	32	HM02K20r_at	HM02K20r	-	-	3e+0	At4g20290	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig12864_at	Contig12864	-	-	4e+0	At3g12710	methyladenine glycosylase family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig5431_s_at	Contig5431	-	-	8e-1	At2g01340	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig5243_at	Contig5243	-	-	2e-2	At1g75550	glycine-rich protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig4677_at	Contig4677	-	-	8e-3	At1g65060	4CL3	C.G.	S.X.	Please select
0.01	3e+0	32	Contig2642_at	Contig2642	-	-	2e-1	At1g77330	1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At2g32470	817808	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.psMC010xP20f_at	PsAffx.psMC010xP20f	-	-	2e+0	At1g07350	transformer serine/arginine-rich ribonucleoprotein, putative	C.G.	S.X.	Please select
0.07	9e-4	46	Oryza sativa	Os03g0303500	9631.m01888	-	-	1e-7	At3g06490	MYB108 (myb domain protein 108)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-1	36	Populus trichocarpa	PtpAffx.249.880.A1_at	BP934904	-	-	5e-1	At2g21290	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.28312.1.S1_at	CA661936	-	-	1e+0	At2g29125	RTFL2 (ROTUNDIFOLIA LIKE 2)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1619382_at	CA817878	hypothetical protein LOC100251065	-	2e-27	At1g48240	ATNPSN12	C.G.	S.X.	Please select
0.06	2e-1	36	Zea mays	Zm.584.1.S1_a_at	U57002.1	pericarp color1	-	1e-8	At2g47460	MYB12 (MYB DOMAIN PROTEIN 12)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage