CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Contig24323_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.97 99.6 Contig24323_at Contig24323 - - 1e+0 At2g46505 SDH4 S.X. H.G.
0.42 55.2 HB08N07r_at HB08N07r - - 2e-1 At3g04590 DNA-binding family protein S.X. H.G.
0.38 49.5 Contig19659_at Contig19659 - - 4e-19 At1g55520 TBP2 (TATA BINDING PROTEIN 2) S.X. H.G.
0.35 45.1 Contig25388_at Contig25388 - - 5e-6 At2g19790 clathrin adaptor complex small chain family protein S.X. H.G.
0.34 43.6 HV_CEa0014A19r2_at HV_CEa0014A19r2 - - 3e+0 At1g58160 jacalin lectin family protein S.X. H.G.
0.32 40.3 Contig16886_at Contig16886 - - 5e+0 At5g60460 sec61beta family protein S.X. H.G.
0.32 40.3 Contig21722_at Contig21722 - - 2e+0 At1g55780 metal ion binding S.X. H.G.
0.31 38.6 Contig4320_at Contig4320 - - 3e+0 At5g53030 unknown protein S.X. H.G.
0.31 38.6 Contig21186_at Contig21186 - - 1e-1 At4g25720 QC (GLUTAMINYL CYCLASE) S.X. H.G.
0.29 35.5 HU11D17u_s_at HU11D17u - - 4e+0 At5g50250 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.8 98.6 GSM440960 Stressed lemma_Rep1 GSE17669 Gene expression in the barley spike during drought stress
6.9 98.3 GSM261024 ABA-Early-rep1 GSE10328 ABA experiment
6.8 98.3 GSM440968 Stressed palea_Rep3 GSE17669 Gene expression in the barley spike during drought stress
6.5 98.2 GSM261041 Dicktoo-deacclimation-rep3 GSE10329 Low temperature stress in cv. Dicktoo
6.3 98.1 GSM440962 Stressed lemma_Rep3 GSE17669 Gene expression in the barley spike during drought stress
5.6 97.7 GSM160822 38% SWC rep3 GSE6990 Barley drought stress
5.4 97.5 GSM160826 19% SWC rep3 GSE6990 Barley drought stress
5.4 97.5 GSM261025 ABA-Early-rep2 GSE10328 ABA experiment
5.3 97.4 GSM261022 ABA-Control-rep2 GSE10328 ABA experiment
5.2 97.4 GSM261038 Dicktoo-subzero-rep3 GSE10329 Low temperature stress in cv. Dicktoo
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 2e-105 381 Contig24012_at Contig24012 - - 1e+0 At2g46505 SDH4 C.G. S.X.
0.29 6e-72 270 Contig21192_at Contig21192 - - 1e+0 At1g12100 lipid binding C.G. S.X.
0.21 8e-59 226 HVSMEl0023A18r2_at HVSMEl0023A18r2 - - 1e+0 At1g12100 lipid binding C.G. S.X.
0.02 2e-1 36 Contig7831_at Contig7831 - - 6e-23 At4g17190 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) C.G. S.X.
0.03 6e-1 34 EBma08_SQ002_F06_at EBma08_SQ002_F06 - - 9e-1 At3g43170 unknown protein C.G. S.X.
0.03 6e-1 34 Contig140_at Contig140 - - 9e-20 At5g59690 histone H4 C.G. S.X.
0.02 3e+0 32 Contig14352_at Contig14352 - - 3e-1 At5g21280 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.01 3e+0 32 Contig12854_at Contig12854 - - 7e-4 At1g36390 co-chaperone grpE family protein C.G. S.X.
0.01 3e+0 32 Contig11984_at Contig11984 - - 6e-2 At1g04970 lipid-binding serum glycoprotein family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At2g46505 819261 SDH4 Encodes succinate dehydrogenase ,a component of mitochondrial respiratory complex II. Nuclear encoded gene which is imported into the mitochondrion. - - - C.G. S.X.
0.04 2e+0 34 Glycine max GmaAffx.20328.1.A1_s_at CD394428 - - 4e-1 At3g03320 - C.G. S.X.
0.04 3e+0 34 Oryza sativa OsAffx.9559.1.S1_at - - - 0 C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.35059.1.S1_s_at CN524276 hypothetical protein - 2e-5 At4g04210 PUX4 C.G. S.X.
0.03 5e+0 32 Triticum aestivum TaAffx.58970.1.S1_at CA611111 - - 9e-1 Atmg00690 - C.G. S.X.
0.04 2e+0 32 Vitis vinifera 1610134_at CB972101 hypothetical protein LOC100262783 - 6e-18 At5g50375 CPI1 (CYCLOPROPYL ISOMERASE) C.G. S.X.
0.04 2e+0 32 Zea mays Zm.4862.2.S1_at AI666004 - - 2e+0 At2g23920 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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