Gene omics information

Query gene ID	Contig24298_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.94	98.9	Contig24298_at	Contig24298	-	-	8e-2	At1g11690	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig15355_at	Contig15355	-	-	5e+0	At2g37570	SLT1 (sodium- and lithium-tolerant 1)	S.X.	H.G.	Please select
0.40	53.1	Contig11912_at	Contig11912	-	-	3e+0	At5g27340	unknown protein	S.X.	H.G.	Please select
0.40	53.1	Contig19064_at	Contig19064	-	-	3e+0	At4g09460	ATMYB6	S.X.	H.G.	Please select
0.38	49.5	Contig1454_at	Contig1454	-	-	4e-52	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	S.X.	H.G.	Please select
0.37	47.9	Contig12341_at	Contig12341	-	-	9e-7	At1g54610	protein kinase family protein	S.X.	H.G.	Please select
0.30	37.0	Contig1122_s_at	Contig1122	-	-	1e-22	At1g07790	HTB1	S.X.	H.G.	Please select
0.30	37.0	Contig7821_at	Contig7821	-	-	3e-3	At1g25420	unknown protein	S.X.	H.G.	Please select
0.29	35.5	Contig11757_at	Contig11757	-	-	3e-1	At1g55365	unknown protein	S.X.	H.G.	Please select
0.26	30.4	Contig5733_at	Contig5733	-	-	2e+0	At5g47670	NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.6	96.8	GSM419973	Lemma_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.6	96.8	GSM440958	Control lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
4.2	96.3	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.2	96.3	GSM160831	7% SWC rep1	GSE6990	Barley drought stress
3.8	95.7	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.8	95.7	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
3.4	94.8	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
3.4	94.8	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
3.3	94.6	GSM160823	19% SWC rep1	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	3e-27	121	Contig9810_at	Contig9810	-	-	1e-14	At5g04090	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Contig21197_at	Contig21197	-	-	4e-1	At5g25210	unknown protein	C.G.	S.X.	Please select
0.01	6e-1	34	Contig10927_at	Contig10927	-	-	1e-8	At4g35850	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig11519_at	Contig11519	-	-	2e-4	At1g66680	AR401	C.G.	S.X.	Please select
0.01	3e+0	32	Contig6275_at	Contig6275	-	-	4e-10	At1g14650	SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig11532_at	Contig11532	-	-	1e-22	At2g42960	protein kinase family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig13565_at	Contig13565	-	-	9e+0	At4g29770	-	C.G.	S.X.	Please select
0.02	1e+1	30	Contig16350_at	Contig16350	-	-	9e-3	At3g57390	AGL18	C.G.	S.X.	Please select
0.02	1e+1	30	Contig11033_at	Contig11033	-	-	6e-7	At2g01690	binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-2	38	Arabidopsis thaliana	At1g11690	837713	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.91386.1.S1_s_at	CF807111	-	-	7e-1	At5g24560	AtPP2-B12 (Phloem protein 2-B12)	C.G.	S.X.	Please select
0.11	5e-26	119	Oryza sativa	Os02g0137100	AK073353.1	-	Uncharacterized plant-specific domain 01589containing protein	1e-12	At5g04090	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.110199.1.S1_at	CF235803	hypothetical protein	-	4e+0	At4g12970	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	2e-46	186	Triticum aestivum	Ta.11430.1.S1_at	CA637362	-	-	4e+0	At4g39860	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1618159_at	CD799696	hypothetical protein LOC100243213	-	1e+1	At5g57790	unknown protein	C.G.	S.X.	Please select
0.21	3e-30	131	Zea mays	Zm.18648.1.A1_at	CO521265	plant-specific domain TIGR01589 family protein	-	6e-3	At1g11690	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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