Gene omics information

Query gene ID	Contig24296_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	80.3	Contig24296_at	Contig24296	-	-	2e-2	At5g03210	unknown protein	S.X.	H.G.	Please select
0.36	47.1	Contig24327_at	Contig24327	-	-	2e+0	At2g32470	F-box family protein-related	S.X.	H.G.	Please select
0.31	38.6	Contig926_x_at	Contig926	-	-	1e-44	At2g34420	LHB1B2	S.X.	H.G.	Please select
0.12	10.4	Contig23884_at	Contig23884	-	-	1e+0	At3g60590	unknown protein	S.X.	H.G.	Please select
0.10	8.4	Contig10728_at	Contig10728	-	-	4e+0	At5g04520	unknown protein	S.X.	H.G.	Please select
0.09	7.4	Contig17047_at	Contig17047	-	-	2e+0	At3g13440	methyltransferase/ nucleic acid binding	S.X.	H.G.	Please select
0.09	7.4	rbags23g22_at	rbags23g22	-	-	5e+0	At5g16880	VHS domain-containing protein / GAT domain-containing protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.0	98.9	GSM238427	Endosperm 72 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.2	98.7	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
7.8	98.6	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
7.7	98.6	GSM238426	Endosperm 72 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.2	98.5	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
7.1	98.4	GSM68889	3 h control replicate 1	GSE3097	Barley1 salinity stress study
7.0	98.4	GSM238420	Endosperm 0 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
6.7	98.3	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
6.4	98.1	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
6.2	98.0	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-1	36	HVSMEa0004L14r2_at	HVSMEa0004L14r2	-	-	1e+1	At4g40090	AGP3 (arabinogalactan-protein 3)	C.G.	S.X.	Please select
0.01	7e-1	34	Contig10247_at	Contig10247	-	-	2e-8	At5g49980	AFB5 (Auxin F-Box protein 5)	C.G.	S.X.	Please select
0.03	7e-1	34	Contig10246_s_at	Contig10246	-	-	5e+0	At3g23380	RIC5 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 5)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig22223_at	Contig22223	-	-	4e-1	At1g29000	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.02	3e+0	32	Contig7332_at	Contig7332	-	-	1e-15	At4g34660	SH3 domain-containing protein 2 (SH3P2)	C.G.	S.X.	Please select
0.03	3e+0	32	rbaal41c09_at	rbaal41c09	-	-	3e-15	At3g11940	ATRPS5A (RIBOSOMAL PROTEIN 5A)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig1750_at	Contig1750	-	-	2e-2	At1g15270	-	C.G.	S.X.	Please select
0.02	3e+0	32	Contig18011_at	Contig18011	-	-	2e-3	At3g60840	MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4)	C.G.	S.X.	Please select
0.02	3e+0	32	Contig14981_at	Contig14981	-	-	5e-1	At1g25330	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-2	40	Arabidopsis thaliana	At5g03210	831903	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.CL1850Contig1_at	PsAffx.CL1850Contig1	-	-	3e+0	At5g15960	KIN1	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	Os11g0227500	9639.m01149	-	-	3e+0	At1g07680	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.208727.1.S1_at	pmrna17304	hypothetical protein	-	3e+0	At4g13400	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	4e-1	36	Triticum aestivum	TaAffx.111241.1.S1_at	CA645129	-	-	5e-2	At5g28610	-	C.G.	S.X.	Please select
0.05	2e+0	32	Vitis vinifera	1619358_at	CB970396	-	-	1e+0	At5g26260	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.03	1e+1	30	Zea mays	ZmAffx.1000.1.A1_at	AI881297	-	-	3e+0	At4g32290	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage