Gene omics information

Query gene ID	Contig24271_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	78.7	Contig24271_at	Contig24271	-	-	2e+0	At3g13710	PRA1.F4 (PRENYLATED RAB ACCEPTOR 1.F4)	S.X.	H.G.	Please select
0.50	66.9	Contig14511_at	Contig14511	-	-	1e-3	At5g28630	glycine-rich protein	S.X.	H.G.	Please select
0.42	55.2	rbags16p14_s_at	rbags16p14	-	-	2e+0	At1g75270	DHAR2 (DEHYDROASCORBATE REDUCTASE 2)	S.X.	H.G.	Please select
0.18	18.2	Contig23275_at	Contig23275	-	-	3e-5	At3g14990	4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative	S.X.	H.G.	Please select
0.17	16.9	Contig14482_at	Contig14482	-	-	1e-4	At3g48940	remorin family protein	S.X.	H.G.	Please select
0.09	7.4	Contig1470_s_at	Contig1470	-	-	6e-3	At4g00610	DNA-binding storekeeper protein-related	S.X.	H.G.	Please select
0.05	4.1	Contig11557_at	Contig11557	-	-	2e+0	At5g27860	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
60.7	100.0	GSM281746	Genotype: Steptoe - rep2	GSE11182	Steptoe x Morex seedling leaf comparison
57.4	100.0	GSM281745	Genotype: Steptoe - rep1	GSE11182	Steptoe x Morex seedling leaf comparison
45.7	99.9	GSM261031	Dicktoo-control-rep2	GSE10329	Low temperature stress in cv. Dicktoo
37.7	99.9	GSM71147	OWB-D unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression
37.1	99.9	GSM281747	Genotype: Steptoe - rep3	GSE11182	Steptoe x Morex seedling leaf comparison
32.1	99.9	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
31.0	99.9	GSM71146	OWB-D unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
23.0	99.8	GSM71145	OWB-D unstress replicate 1	GSE3170	Barley single feature polymorphisms and drought stress gene expression
22.4	99.8	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
17.8	99.7	GSM71159	Steptoe stress and unstress replicate 3	GSE3170	Barley single feature polymorphisms and drought stress gene expression

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-4	44	Contig25551_at	Contig25551	-	-	9e-2	At3g43810	CAM7 (CALMODULIN 7)	C.G.	S.X.	Please select
0.01	3e-3	42	Contig4846_at	Contig4846	-	-	4e-1	At2g42040	-	C.G.	S.X.	Please select
0.02	3e-3	42	Contig23628_at	Contig23628	-	-	4e-8	At4g31040	proton extrusion protein-related	C.G.	S.X.	Please select
0.02	3e-3	42	Contig22285_at	Contig22285	-	-	6e-16	At2g04842	EMB2761 (EMBRYO DEFECTIVE 2761)	C.G.	S.X.	Please select
0.03	3e-3	42	Contig24426_at	Contig24426	-	-	5e+0	At4g03170	DNA binding	C.G.	S.X.	Please select
0.02	3e-3	42	Contig16462_at	Contig16462	-	-	2e+0	At5g14910	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.03	3e-3	42	Contig13436_at	Contig13436	-	-	3e-1	At3g23200	unknown protein	C.G.	S.X.	Please select
0.02	3e-3	42	Contig11764_at	Contig11764	-	-	7e-1	At4g06634	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.02	3e-3	42	Contig9286_at	Contig9286	-	-	2e+0	At2g38304	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At3g13710	820580	PRA1.F4 (PRENYLATED RAB ACCEPTOR 1.F4)	F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	PsAffx.C179000019_at	PsAffx.C179000019	-	-	2e+0	At3g10585	myb family transcription factor / I-box binding factor-related protein	C.G.	S.X.	Please select
0.29	2e-26	121	Oryza sativa	Os12g0199800	9640.m00917	-	Cytochrome P450 family protein	3e+0	At1g66100	thionin, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	9e+0	32	Populus trichocarpa	PtpAffx.32385.2.S1_at	DN483610	hypothetical protein	-	5e-1	At4g22160	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	2e-18	93	Triticum aestivum	TaAffx.108284.1.S1_at	CD875162	-	-	6e-5	At4g13770	CYP83A1 (CYTOCHROME P450 83A1)	C.G.	S.X.	Please select
0.04	2e+0	32	Vitis vinifera	1612865_at	CF203608.1	-	-	3e-1	At2g37480	unknown protein	C.G.	S.X.	Please select
0.04	1e-2	40	Zea mays	Zm.4274.1.S1_at	CO527025	hypothetical protein LOC100191539	-	1e-3	At2g40890	CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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