Gene omics information

Query gene ID	Contig24268_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig24268_at	Contig24268	-	-	2e+0	At5g57345	unknown protein	S.X.	H.G.	Please select
0.60	77.3	Contig4494_x_at	Contig4494	-	-	5e+0	At5g55508	unknown protein	S.X.	H.G.	Please select
0.50	66.9	Contig9113_s_at	Contig9113	-	-	2e-26	At5g11980	conserved oligomeric Golgi complex component-related / COG complex component-related	S.X.	H.G.	Please select
0.50	66.9	HVSMEh0085G19f_at	HVSMEh0085G19f	-	-	3e+0	At1g75510	transcription initiation factor IIF beta subunit (TFIIF-beta) family protein	S.X.	H.G.	Please select
0.50	66.9	HY02G07u_at	HY02G07u	-	-	4e+0	At2g28420	lactoylglutathione lyase family protein / glyoxalase I family protein	S.X.	H.G.	Please select
0.44	58.9	Contig12027_at	Contig12027	ORG4	-	2e-3	At2g06010	ORG4 (OBP3-RESPONSIVE GENE 4)	S.X.	H.G.	Please select
0.42	55.2	Contig6325_at	Contig6325	-	-	4e-1	At5g25490	zinc finger (Ran-binding) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.0	99.6	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
15.9	99.6	GSM160826	19% SWC rep3	GSE6990	Barley drought stress
14.3	99.5	GSM68893	3 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study
13.3	99.4	GSM398251	Martin_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
11.4	99.3	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
7.9	98.7	GSM372938	genotype: Mla6 - pathogen isolates: 5874 - time: 0 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
7.5	98.6	GSM68900	8 h salt stressed replicate 3	GSE3097	Barley1 salinity stress study
7.1	98.4	GSM261056	Xantha b-12 Cotrol rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
6.8	98.3	GSM372950	genotype: Mla6 - pathogen isolates: 5874 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
6.8	98.3	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	1e-88	325	Contig13024_at	Contig13024	-	-	6e+0	At4g21560	VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1)	C.G.	S.X.	Please select
0.43	6e-88	323	Contig20255_at	Contig20255	-	-	2e-1	At5g03350	legume lectin family protein	C.G.	S.X.	Please select
0.44	2e-72	272	Contig26250_at	Contig26250	-	-	6e+0	At4g38210	ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20)	C.G.	S.X.	Please select
0.63	7e-66	250	Contig20943_at	Contig20943	-	-	2e+0	At1g77746	unknown protein	C.G.	S.X.	Please select
0.25	1e-45	182	Contig24039_at	Contig24039	-	-	1e+0	At3g60600	VAP (VESICLE ASSOCIATED PROTEIN)	C.G.	S.X.	Please select
0.24	3e-43	174	Contig17862_at	Contig17862	-	-	1e+0	At5g10550	GTE2 (Global transcription factor group E 2)	C.G.	S.X.	Please select
0.35	1e-30	133	Contig24055_at	Contig24055	-	-	5e+0	At5g40451	unknown protein	C.G.	S.X.	Please select
0.16	6e-20	97	EBro08_SQ007_M23_at	EBro08_SQ007_M23	-	-	5e+0	At3g01940	unknown protein	C.G.	S.X.	Please select
0.11	6e-20	97	Contig16591_at	Contig16591	-	-	1e+1	At4g05440	EDA35 (embryo sac development arrest 35)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g57345	835840	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	9e+0	32	Glycine max	PsAffx.CL1035Contig1_at	PsAffx.CL1035Contig1	-	-	4e+0	At4g22330	ATCES1	C.G.	S.X.	Please select
0.04	2e-1	38	Oryza sativa	OsAffx.10020.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.223349.1.S1_at	pmrna41297	hypothetical protein	-	2e-4	At4g32840	PFK6 (PHOSPHOFRUCTOKINASE 6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	4e-4	46	Triticum aestivum	TaAffx.84357.3.S1_at	BE492044	-	-	4e+0	At3g46890	-	C.G.	S.X.	Please select
0.03	8e+0	30	Vitis vinifera	1621199_at	CF204390.1	-	-	1e+1	At5g11440	CID5	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.6133.1.A1_at	AW067175	-	-	2e-1	At3g57280	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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