Gene omics information

Query gene ID	Contig2421_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	58.9	Contig2421_at	Contig2421	-	-	7e-2	At5g02380	MT2B (METALLOTHIONEIN 2B)	S.X.	H.G.	Please select
0.63	80.3	Contig2750_s_at	Contig2750	-	-	4e-15	At2g33150	PKT3 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 3)	S.X.	H.G.	Please select
0.63	80.3	Contig2748_at	Contig2748	-	-	1e-2	At4g20130	PTAC14 (PLASTID TRANSCRIPTIONALLY ACTIVE14)	S.X.	H.G.	Please select
0.63	80.3	Contig26180_at	Contig26180	-	-	4e+0	At5g05690	CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)	S.X.	H.G.	Please select
0.55	72.0	Contig14353_at	Contig14353	-	-	9e-3	At1g49950	DNA-binding protein, putative	S.X.	H.G.	Please select
0.50	66.9	Contig6587_s_at	Contig6587	-	-	1e-4	At3g52470	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	S.X.	H.G.	Please select
0.48	63.2	Contig67_at	Contig67	-	-	4e-40	At2g37600	60S ribosomal protein L36 (RPL36A)	S.X.	H.G.	Please select
0.23	26.1	HVSMEb0005F19r2_at	HVSMEb0005F19r2	-	-	3e-1	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
46.5	99.9	GSM146368	Maythorpe Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
39.4	99.9	GSM146362	Golden Promise Root Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
39.4	99.9	GSM146365	Maythorpe Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
38.5	99.9	GSM146367	Maythorpe Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
35.1	99.9	GSM146364	Maythorpe Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
34.8	99.9	GSM146359	Golden Promise Root Control, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
34.5	99.9	GSM146361	Golden Promise Root Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
33.2	99.9	GSM146358	Golden Promise Root Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
22.2	99.8	GSM146366	Maythorpe Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
18.2	99.7	GSM146360	Golden Promise Root Salt, biological rep 1	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.88	0	757	Contig2423_s_at	Contig2423	-	-	1e+0	At1g07600	MT1A (METALLOTHIONEIN 1A)	C.G.	S.X.	Please select
0.78	2e-123	440	Contig2424_at	Contig2424	-	-	2e-1	At5g02380	MT2B (METALLOTHIONEIN 2B)	C.G.	S.X.	Please select
0.71	2e-123	440	Contig2422_at	Contig2422	-	-	4e-3	At1g07610	MT1C	C.G.	S.X.	Please select
0.19	1e-14	79	Contig777_at	Contig777	-	-	1e+0	At2g42000	plant EC metallothionein-like family 15 protein	C.G.	S.X.	Please select
0.15	4e-5	48	rbaal3p07_s_at	rbaal3p07	-	-	6e-1	At2g42000	plant EC metallothionein-like family 15 protein	C.G.	S.X.	Please select
0.02	5e-1	34	Contig9352_at	Contig9352	-	-	5e-2	At5g05230	ubiquitin-protein ligase	C.G.	S.X.	Please select
0.01	5e-1	34	Contig5018_s_at	Contig5018	-	-	1e-10	At4g33090	APM1 (AMINOPEPTIDASE M1)	C.G.	S.X.	Please select
0.04	5e-1	34	Contig22311_at	Contig22311	-	-	2e+0	At5g37760	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.03	5e-1	34	Contig14953_at	Contig14953	-	-	5e+0	At5g15830	AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	7e-2	38	Arabidopsis thaliana	At5g02380	831816	MT2B (METALLOTHIONEIN 2B)	cysteine-rich protein with copper-binding activity	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	GmaAffx.86008.1.S1_at	BF597321	-	-	4e+0	At5g02380	MT2B (METALLOTHIONEIN 2B)	C.G.	S.X.	Please select
0.30	2e-37	157	Oryza sativa	Os03g0288000	AK103162.1	-	Metallothionein-like protein 1 (MT-1)	4e-1	At5g02380	MT2B (METALLOTHIONEIN 2B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-1	36	Populus trichocarpa	PtpAffx.140129.1.A1_at	CV271008	-	-	8e+0	At5g28919	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.73	3e-112	404	Triticum aestivum	Ta.28160.1.S1_x_at	CD867734	-	-	4e-3	At1g07610	MT1C	C.G.	S.X.	Please select
0.08	1e-6	52	Vitis vinifera	1607145_s_at	CF205429.1	hypothetical protein LOC100250087	-	5e+0	At3g23290	-	C.G.	S.X.	Please select
0.17	1e-26	119	Zea mays	Zm.5754.1.A2_at	AY106081.1	-	-	7e-1	At1g07610	MT1C	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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