Gene omics information

Query gene ID	Contig24039_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	Contig24039_at	Contig24039	-	-	1e+0	At3g60600	VAP (VESICLE ASSOCIATED PROTEIN)	S.X.	H.G.	Please select
0.50	66.9	2623978_R_1403-2212_at	2623978_R_1403-2212	-	-	2e+0	At3g16350	myb family transcription factor	S.X.	H.G.	Please select
0.40	53.1	S0000800072B12F1_at	S0000800072B12F1	-	-	9e+0	At1g07476	unknown protein	S.X.	H.G.	Please select
0.36	47.1	HT07P24u_at	HT07P24u	-	-	4e+0	At3g49305	-	S.X.	H.G.	Please select
0.24	27.2	Contig322_at	Contig322	-	-	1e-5	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	S.X.	H.G.	Please select
0.13	11.6	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
31.9	99.9	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
22.0	99.8	GSM440960	Stressed lemma_Rep1	GSE17669	Gene expression in the barley spike during drought stress
18.8	99.7	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
18.3	99.7	GSM440961	Stressed lemma_Rep2	GSE17669	Gene expression in the barley spike during drought stress
17.7	99.7	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
16.3	99.6	GSM440966	Stressed palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress
15.6	99.6	GSM261024	ABA-Early-rep1	GSE10328	ABA experiment
14.4	99.5	GSM440967	Stressed palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
12.4	99.4	GSM419975	Palea_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
12.4	99.4	GSM440963	Control palea_Rep1	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	1e-97	355	Contig16591_at	Contig16591	-	-	1e+1	At4g05440	EDA35 (embryo sac development arrest 35)	C.G.	S.X.	Please select
0.41	9e-74	276	Contig17862_at	Contig17862	-	-	1e+0	At5g10550	GTE2 (Global transcription factor group E 2)	C.G.	S.X.	Please select
0.33	1e-72	272	Contig20943_at	Contig20943	-	-	2e+0	At1g77746	unknown protein	C.G.	S.X.	Please select
0.43	2e-71	268	EBro08_SQ007_M23_at	EBro08_SQ007_M23	-	-	5e+0	At3g01940	unknown protein	C.G.	S.X.	Please select
0.45	8e-68	256	Contig20255_at	Contig20255	-	-	2e-1	At5g03350	legume lectin family protein	C.G.	S.X.	Please select
0.38	3e-61	234	Contig24055_at	Contig24055	-	-	5e+0	At5g40451	unknown protein	C.G.	S.X.	Please select
0.27	7e-59	226	Contig26250_at	Contig26250	-	-	6e+0	At4g38210	ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20)	C.G.	S.X.	Please select
0.30	3e-52	204	Contig13024_at	Contig13024	-	-	6e+0	At4g21560	VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1)	C.G.	S.X.	Please select
0.25	1e-45	182	Contig24268_at	Contig24268	-	-	2e+0	At5g57345	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At3g60600	825231	VAP (VESICLE ASSOCIATED PROTEIN)	Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e+0	32	Glycine max	GmaAffx.91289.1.S1_at	CF807014	-	-	3e+0	At3g42830	ring-box protein Roc1/Rbx1/Hrt1, putative	C.G.	S.X.	Please select
0.03	9e+0	32	Oryza sativa	OsAffx.9852.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.209904.1.S1_at	pmrna19518	hypothetical protein	-	2e+0	At3g05936	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	2e-8	59	Triticum aestivum	TaAffx.7664.1.S1_at	CA654269	-	-	4e+0	At3g61440	CYSC1 (CYSTEINE SYNTHASE C1)	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1612492_at	CB343505	-	-	2e-1	At4g09010	APX4 (ASCORBATE PEROXIDASE 4)	C.G.	S.X.	Please select
0.02	2e+0	32	Zea mays	Zm.4498.1.A1_at	CD446378	hypothetical protein LOC100191506	-	6e+0	At4g20470	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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