Gene omics information

Query gene ID	Contig23898_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	Contig23898_at	Contig23898	-	-	4e-1	At2g01610	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.91	98.1	Contig15145_at	Contig15145	-	-	1e-61	At3g09920	PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE)	S.X.	H.G.	Please select
0.91	98.1	HV_CEa0012H15r2_at	HV_CEa0012H15r2	-	-	4e+0	At1g11450	nodulin MtN21 family protein	S.X.	H.G.	Please select
0.91	98.1	Contig9426_at	Contig9426	-	-	2e-2	At5g51340	unknown protein	S.X.	H.G.	Please select
0.91	98.1	Contig21454_x_at	Contig21454	-	-	4e+0	At4g01265	raffinose synthase family protein / seed imbibition protein-related	S.X.	H.G.	Please select
0.57	74.9	Contig21304_s_at	Contig21304	-	-	3e+0	At5g10390	histone H3	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.3	99.7	GSM373008	genotype: 11542 - pathogen isolates: K1 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
18.5	99.7	GSM373005	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
17.5	99.6	GSM372998	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
16.8	99.6	GSM373004	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
15.5	99.6	GSM372999	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.9	99.5	GSM373001	genotype: 11542 - pathogen isolates: K1 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.9	99.5	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.8	99.5	GSM373009	genotype: 11542 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.5	99.5	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
13.4	99.4	GSM372984	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	34	Contig15467_at	Contig15467	-	-	5e+0	At3g15358	unknown protein	C.G.	S.X.	Please select
0.01	8e-1	34	Contig9921_at	Contig9921	-	-	3e+0	At3g07860	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	Contig8182_at	Contig8182	-	-	1e+0	At2g30560	glycine-rich protein	C.G.	S.X.	Please select
0.01	3e+0	32	Contig7904_at	Contig7904	-	-	2e-4	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	C.G.	S.X.	Please select
0.01	3e+0	32	Contig6161_at	Contig6161	-	-	1e-2	At5g35080	protein binding	C.G.	S.X.	Please select
0.01	3e+0	32	Contig5144_at	Contig5144	-	-	7e-14	At5g27470	seryl-tRNA synthetase / serine--tRNA ligase	C.G.	S.X.	Please select
0.02	3e+0	32	HW03F03u_at	HW03F03u	-	-	1e+1	At5g44900	transmembrane receptor	C.G.	S.X.	Please select
0.02	3e+0	32	Contig24018_at	Contig24018	-	-	2e+0	At5g57540	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	C.G.	S.X.	Please select
0.03	3e+0	32	Contig15137_at	Contig15137	-	-	4e-1	At3g27200	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-1	36	Arabidopsis thaliana	At2g01610	814690	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e+0	34	Glycine max	GmaAffx.44833.1.S1_at	BQ453652	-	-	1e-3	At5g54400	methyltransferase	C.G.	S.X.	Please select
0.03	3e+0	34	Oryza sativa	Os10g0378450	9638.m01977	-	-	5e+0	At4g39260	GR-RBP8	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.249.866.A1_at	CV256246	-	-	3e+0	At2g36355	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e-1	36	Triticum aestivum	Ta.20620.1.S1_at	CA484476	-	-	3e+0	At5g20180	ribosomal protein L36 family protein	C.G.	S.X.	Please select
0.02	8e+0	30	Vitis vinifera	1620436_a_at	CB910355	hypothetical protein LOC100261866	-	1e+1	At5g59080	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.6084.2.S1_at	AY105635.1	-	-	5e-28	At3g13235	ubiquitin family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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