Gene omics information

Query gene ID	Contig23884_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.8	Contig23884_at	Contig23884	-	-	1e+0	At3g60590	unknown protein	S.X.	H.G.	Please select
0.50	66.9	HP01O07w_at	HP01O07w	-	-	3e+0	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	S.X.	H.G.	Please select
0.48	63.2	Contig7945_at	Contig7945	-	-	6e-57	At1g53310	ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1)	S.X.	H.G.	Please select
0.39	50.5	Contig23011_at	Contig23011	-	-	3e-26	At5g28650	WRKY74	S.X.	H.G.	Please select
0.34	43.6	Contig2163_at	Contig2163	-	-	3e-1	At2g04046	-	S.X.	H.G.	Please select
0.33	42.6	Contig9920_at	Contig9920	-	-	7e-1	At3g15095	unknown protein	S.X.	H.G.	Please select
0.32	40.3	Contig18430_at	Contig18430	-	-	2e-2	At1g18340	basal transcription factor complex subunit-related	S.X.	H.G.	Please select
0.31	38.6	Contig23200_at	Contig23200	-	-	6e-6	At3g20810	transcription factor jumonji (jmjC) domain-containing protein	S.X.	H.G.	Please select
0.30	37.0	Contig2490_at	Contig2490	-	-	1e-6	At1g62660	beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar	S.X.	H.G.	Please select
0.28	35.5	Contig982_at	Contig982	-	-	2e-1	At5g20520	WAV2 (WAVY GROWTH 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.9	98.3	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
5.9	97.9	GSM261076	Albina e-16 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
5.5	97.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
5.5	97.6	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
5.1	97.3	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.1	97.3	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
4.6	96.8	GSM160822	38% SWC rep3	GSE6990	Barley drought stress
4.3	96.4	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
4.2	96.3	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.1	96.2	GSM261070	Albina f-17 Control rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	34	Contig13672_at	Contig13672	-	-	3e+0	At3g14030	-	C.G.	S.X.	Please select
0.03	6e-1	34	HA03G12r_at	HA03G12r	-	-	8e-2	At1g32470	glycine cleavage system H protein, mitochondrial, putative	C.G.	S.X.	Please select
0.03	6e-1	34	Contig14389_at	Contig14389	-	-	6e-2	At1g32470	glycine cleavage system H protein, mitochondrial, putative	C.G.	S.X.	Please select
0.02	6e-1	34	Contig10168_at	Contig10168	-	-	3e-2	At5g26170	WRKY50	C.G.	S.X.	Please select
0.01	2e+0	32	Contig5785_at	Contig5785	-	-	2e-5	At1g29370	kinase-related	C.G.	S.X.	Please select
0.02	2e+0	32	Contig20101_at	Contig20101	-	-	4e-4	At2g19350	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Contig12840_at	Contig12840	-	-	1e-24	At2g21470	SAE2 (SUMO-ACTIVATING ENZYME 2)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig19070_at	Contig19070	-	-	2e+0	At5g02280	synbindin, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Contig15176_at	Contig15176	-	-	2e+0	At3g47790	ATATH7	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At3g60590	825230	unknown protein	F:unknown;P:unknown;C:chloroplast, chloroplast inner membrane, chloroplast envelope;PBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	HgAffx.24181.1.S1_at	BF013668	-	-	3e-1	At1g80110	ATPP2-B11 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-B11)	C.G.	S.X.	Please select
0.02	2e-1	38	Oryza sativa	Os02g0814800	AK109850.1	-	-	5e-8	At5g44000	glutathione S-transferase C-terminal domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e+0	32	Populus trichocarpa	PtpAffx.84033.1.S1_at	CK103745	hypothetical protein	-	2e-7	At4g12420	SKU5	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	32	Triticum aestivum	TaAffx.85308.1.S1_at	CA623835	-	-	2e+1	Atmg00910	-	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1620513_at	CB339511	-	-	2e+0	At4g33565	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	ZmAffx.1500.1.S1_at	40794996-117	-	-	6e-78	Atcg01310	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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