Gene omics information

Query gene ID	Contig23856_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.89	95.4	Contig23856_at	Contig23856	-	-	1e+0	At1g67590	remorin family protein	S.X.	H.G.	Please select
0.64	80.9	HV14B03u_at	HV14B03u	-	-	3e+0	At4g36170	unknown protein	S.X.	H.G.	Please select
0.53	69.7	Contig13509_at	Contig13509	-	-	5e+0	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	S.X.	H.G.	Please select
0.49	63.7	rbaal17m22_at	rbaal17m22	-	-	3e-1	At5g28615	-	S.X.	H.G.	Please select
0.48	63.2	EBro08_SQ010_A22_at	EBro08_SQ010_A22	-	-	1e+1	At5g39600	unknown protein	S.X.	H.G.	Please select
0.44	58.9	HV12N12u_at	HV12N12u	-	-	7e-2	At5g41200	AGL75 (AGAMOUS-LIKE 75)	S.X.	H.G.	Please select
0.43	56.4	rbaak19o02_s_at	rbaak19o02	-	-	1e+0	At4g14815	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.42	55.2	Contig16016_at	Contig16016	-	-	2e+0	At1g59710	-	S.X.	H.G.	Please select
0.41	53.9	HW05P14u_at	HW05P14u	-	-	2e-1	At1g64830	aspartyl protease family protein	S.X.	H.G.	Please select
0.40	53.1	Contig24913_at	Contig24913	-	-	1e+0	At1g32370	TOM2B (TOBAMOVIRUS MULTIPLICATION 2B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.2	99.9	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
30.0	99.9	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
18.4	99.7	GSM238413	Endosperm 4DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
16.1	99.6	GSM238411	Pericarp 8DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
13.1	99.4	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
11.4	99.3	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
10.6	99.2	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
9.7	99.0	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
9.7	99.0	GSM238415	Endosperm 8DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
8.4	98.8	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	36	Contig11601_at	Contig11601	-	-	2e-12	At3g24010	ING1 (INHIBITOR OF GROWTH 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig7890_at	Contig7890	-	-	4e-5	At3g55000	TON1A (TONNEAU 1)	C.G.	S.X.	Please select
0.03	2e+0	32	HA10I17u_at	HA10I17u	-	-	2e+1	At5g04090	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	AB019525_at	AB019525	-	-	1e-2	At1g56430	NAS4 (NICOTIANAMINE SYNTHASE 4)	C.G.	S.X.	Please select
0.02	2e+0	32	AB011266_at	AB011266	-	-	2e+0	At3g62070	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig10741_at	Contig10741	-	-	3e+0	At2g34110	-	C.G.	S.X.	Please select
0.02	2e+0	32	Contig11450_at	Contig11450	-	-	2e+0	At4g37830	cytochrome c oxidase-related	C.G.	S.X.	Please select
0.02	2e+0	32	Contig8664_at	Contig8664	-	-	2e-10	At4g13640	UNE16 (unfertilized embryo sac 16)	C.G.	S.X.	Please select
0.03	2e+0	32	rbah27b21_s_at	rbah27b21	-	-	5e+0	At5g55970	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	34	Arabidopsis thaliana	At1g67590	843080	remorin family protein	F:DNA binding;P:biological_process unknown;C:nucleus;OPBMFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.45299.1.S1_at	AW567880	-	-	9e-35	At4g36980	unknown protein	C.G.	S.X.	Please select
0.13	7e-16	85	Oryza sativa	Os02g0174300	9630.m00732	-	Homeodomain-like containing protein	2e-1	At1g53240	malate dehydrogenase (NAD), mitochondrial	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.216207.1.S1_at	pmrna30852	hypothetical protein	-	7e-1	At1g01840	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.70	1e-96	353	Triticum aestivum	TaAffx.609.1.S1_at	BG314237	-	-	1e+0	At3g48140	senescence-associated protein, putative	C.G.	S.X.	Please select
0.04	2e-2	38	Vitis vinifera	1616969_at	CF510605	-	-	2e-67	At1g63770	peptidase M1 family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	ZmAffx.1010.1.A1_at	AI881417	-	-	2e-1	At2g45250	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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