Gene omics information

Query gene ID	Contig23795_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	Contig23795_at	Contig23795	-	-	1e+1	At5g49220	unknown protein	S.X.	H.G.	Please select
0.83	94.0	Contig1364_at	Contig1364	-	-	4e-25	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	S.X.	H.G.	Please select
0.73	88.7	Contig14007_at	Contig14007	-	-	2e-1	At2g17780	MCA2 (mid1-complementing activity 2)	S.X.	H.G.	Please select
0.71	87.1	Contig742_at	Contig742	-	-	4e-3	At1g48920	ATNUC-L1	S.X.	H.G.	Please select
0.67	84.7	Contig7625_at	Contig7625	-	-	4e-1	At5g36659	-	S.X.	H.G.	Please select
0.55	72.0	Contig9113_at	Contig9113	-	-	2e-26	At5g11980	conserved oligomeric Golgi complex component-related / COG complex component-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
38.8	99.9	GSM419979	Awn_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
38.8	99.9	GSM440970	Control awn_Rep2	GSE17669	Gene expression in the barley spike during drought stress
34.3	99.9	GSM419980	Awn_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
34.3	99.9	GSM440971	Control awn_Rep3	GSE17669	Gene expression in the barley spike during drought stress
31.1	99.9	GSM419978	Awn_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
31.1	99.9	GSM440969	Control awn_Rep1	GSE17669	Gene expression in the barley spike during drought stress
18.3	99.7	GSM419976	Palea_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
18.3	99.7	GSM440964	Control palea_Rep2	GSE17669	Gene expression in the barley spike during drought stress
15.2	99.5	GSM419974	Lemma_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
15.2	99.5	GSM440959	Control lemma_Rep3	GSE17669	Gene expression in the barley spike during drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-7	54	Contig13288_at	Contig13288	-	-	1e-4	At1g72520	lipoxygenase, putative	C.G.	S.X.	Please select
0.12	3e-7	54	Contig2306_s_at	Contig2306	-	-	1e+0	At5g18600	glutaredoxin family protein	C.G.	S.X.	Please select
0.07	2e-5	48	HVSMEg0005M23r2_at	HVSMEg0005M23r2	-	-	2e-1	At3g57730	protein kinase, putative	C.G.	S.X.	Please select
0.01	9e-5	46	Contig1736_at	Contig1736	lipoxygenase 1 protein	-	1e+0	At3g22400	LOX5	C.G.	S.X.	Please select
0.04	5e-3	40	HVSMEf0009L21r2_s_at	HVSMEf0009L21r2	-	-	3e-1	At5g57550	XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)	C.G.	S.X.	Please select
0.01	5e-3	40	Contig1735_s_at	Contig1735	-	-	1e+0	At3g22400	LOX5	C.G.	S.X.	Please select
0.01	2e-2	38	Contig1737_at	Contig1737	-	-	6e-3	At1g55020	LOX1	C.G.	S.X.	Please select
0.03	8e-2	36	Contig15264_at	Contig15264	-	-	2e+0	At1g31750	proline-rich family protein	C.G.	S.X.	Please select
0.07	8e-2	36	Contig18600_at	Contig18600	-	-	8e-5	At1g72520	lipoxygenase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+1	30	Arabidopsis thaliana	At5g49220	834982	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	2e-1	36	Glycine max	Gma.1.1.A1_at	U36442.1	lipoxygenase	-	5e-1	At5g20180	ribosomal protein L36 family protein	C.G.	S.X.	Please select
0.07	1e-25	117	Oryza sativa	Os02g0194700	AK071915.1	-	Plant lipoxygenase family protein	4e-1	At5g66010	RNA binding / nucleic acid binding / nucleotide binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.30743.5.A1_at	CV244509	hypothetical protein	-	2e-2	At3g61840	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.65	6e-94	343	Triticum aestivum	Ta.485.2.S1_at	CA696300	-	-	2e+1	At5g25390	SHN2 (shine2)	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1612884_at	CA810969	-	-	4e+0	At3g24513	-	C.G.	S.X.	Please select
0.06	2e-20	97	Zea mays	Zm.14487.1.S1_at	AY104322.1	lipoxygenase	-	7e-3	At3g45140	LOX2 (LIPOXYGENASE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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