Gene omics information

Query gene ID	Contig23732_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.84	94.3	Contig23732_at	Contig23732	-	-	6e-1	At1g05190	emb2394 (embryo defective 2394)	S.X.	H.G.	Please select
0.81	92.8	Contig14763_at	Contig14763	-	-	2e-1	At2g37510	RNA-binding protein, putative	S.X.	H.G.	Please select
0.80	92.5	HM01F24T_s_at	HM01F24T	-	-	4e-5	At2g33370	60S ribosomal protein L23 (RPL23B)	S.X.	H.G.	Please select
0.76	89.8	Contig20949_at	Contig20949	-	-	2e+0	At4g34150	C2 domain-containing protein	S.X.	H.G.	Please select
0.74	89.1	Contig22905_at	Contig22905	-	-	4e-1	At2g34480	60S ribosomal protein L18A (RPL18aB)	S.X.	H.G.	Please select
0.73	88.7	Contig19492_at	Contig19492	-	-	5e-1	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	S.X.	H.G.	Please select
0.73	88.7	Contig10241_at	Contig10241	-	-	2e-9	At1g29120	unknown protein	S.X.	H.G.	Please select
0.72	87.4	Contig15982_at	Contig15982	-	-	3e-4	At3g19290	ABF4 (ABRE BINDING FACTOR 4)	S.X.	H.G.	Please select
0.69	85.5	Contig16972_at	Contig16972	-	-	5e-10	At5g64813	LIP1 (Light Insensitive Period1)	S.X.	H.G.	Please select
0.68	85.1	Contig23530_s_at	Contig23530	-	-	8e+0	At3g57072	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.2	97.4	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.2	97.4	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
5.2	97.4	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
5.2	97.4	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
5.1	97.3	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.9	97.1	GSM398251	Martin_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.7	96.9	GSM398283	Moroc9-75_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.6	96.8	GSM398258	Martin_5d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.6	96.8	GSM398259	Martin_5d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
4.5	96.7	GSM398260	Martin_5d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-2	36	Contig7902_at	Contig7902	-	-	3e-15	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	C.G.	S.X.	Please select
0.03	1e+0	32	Contig6846_s_at	Contig6846	-	-	4e-8	At5g60540	PDX2 (PYRIDOXINE BIOSYNTHESIS 2)	C.G.	S.X.	Please select
0.02	1e+0	32	Contig12665_at	Contig12665	-	-	5e-8	At2g02150	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.02	5e+0	30	Contig6631_at	Contig6631	-	-	5e-1	At1g72960	root hair defective 3 GTP-binding (RHD3) family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Contig3462_at	Contig3462	-	-	5e-35	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	C.G.	S.X.	Please select
0.03	5e+0	30	Contig6535_at	Contig6535	-	-	5e-34	At2g42500	PP2A-4	C.G.	S.X.	Please select
0.01	5e+0	30	Contig741_s_at	Contig741	-	-	9e-32	At5g27640	TIF3B1 (TRANSLATION INITIATION FACTOR 3B1)	C.G.	S.X.	Please select
0.05	5e+0	30	HT12E22u_s_at	HT12E22u	-	-	2e+0	At2g45695	-	C.G.	S.X.	Please select
0.03	5e+0	30	HVSMEm0015J02r2_at	HVSMEm0015J02r2	-	-	5e+0	At5g39645	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-1	34	Arabidopsis thaliana	At1g05190	839273	emb2394 (embryo defective 2394)	F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:chloroplast stroma, chloroplast, large ribosomal subunit, membrane, chloroplast envelope;BOAFPM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	8e-1	34	Glycine max	HgAffx.12035.1.S1_at	CB375947	-	-	2e-1	At3g24730	catalytic	C.G.	S.X.	Please select
0.03	5e+0	32	Oryza sativa	OsAffx.10729.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	8e-1	34	Populus trichocarpa	PtpAffx.18912.1.A1_at	CV229128	-	-	4e+0	At4g23870	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.71	2e-53	208	Triticum aestivum	TaAffx.8068.1.S1_at	CA637539	-	-	2e+0	At4g16350	CBL6 (CALCINEURIN B-LIKE PROTEIN 6)	C.G.	S.X.	Please select
0.04	3e+0	30	Vitis vinifera	1613804_at	CF514968	hypothetical protein LOC100241466	-	4e+0	At5g53690	unknown protein	C.G.	S.X.	Please select
0.04	4e+0	30	Zea mays	Zm.4338.3.A1_at	AW000126	-	-	3e+0	At5g27170	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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